Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m01
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0335 + 33211705-33211800,33211886-33211982,33212078-332122...   166   1e-41
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159...    29   3.3  
06_01_0364 + 2591861-2593285                                           29   3.3  
04_04_0806 - 28186486-28186701,28187047-28187341,28189800-281899...    28   5.9  

>03_06_0335 +
           33211705-33211800,33211886-33211982,33212078-33212204,
           33212953-33213138,33213702-33213789,33214028-33214084,
           33214171-33214260,33214339-33214461,33215024-33215098,
           33215169-33215228,33215464-33215580,33215854-33216093,
           33216181-33216246,33216370-33216459,33216914-33217003,
           33217309-33217398,33217702-33217770,33217841-33217921,
           33218108-33218215,33218336-33218439,33218822-33218935,
           33219018-33219231
          Length = 793

 Score =  166 bits (404), Expect = 1e-41
 Identities = 84/155 (54%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
 Frame = +3

Query: 171 EEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGELRTSLLSPKSYYELYMA 350
           +++E+ L E +  V+  AF M R LD + L DALK+++ ML ELRTS LSP  YY+LYM 
Sbjct: 8   DDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYDLYMR 67

Query: 351 ITDXXXXXXXXXXXXFQKGR-KVADLYELVQYAGNIVPRLYLLITVGLVYIKTNTNLRRD 527
             D             ++G   V DLYELVQ+AGN++PRLYLL TVG VYIK+     +D
Sbjct: 68  AFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGNVLPRLYLLCTVGSVYIKSKEAPAKD 127

Query: 528 LLKDLVEMCRGVQHPLRGLFLRNYLLQCXRNVLPD 632
           +LKDLVEMCRG+QHPLRGLFLR+YL Q  R+ LPD
Sbjct: 128 VLKDLVEMCRGIQHPLRGLFLRSYLSQISRDKLPD 162


>12_02_0478 +
           19514509-19514940,19515749-19515820,19515954-19515986,
           19516169-19516830,19516905-19517045,19518634-19518830,
           19518878-19518965,19518987-19519041,19519501-19519571,
           19519709-19519763,19519881-19519896,19520286-19520361,
           19521202-19521240,19521312-19521333
          Length = 652

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 195 PPGVSPALRLETPGLSFGP 139
           PPG+SP+  L++PGL F P
Sbjct: 124 PPGLSPSGLLDSPGLLFSP 142


>06_01_0364 + 2591861-2593285
          Length = 474

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 219 EL*QCSRPPPGVSPALRLETPGLSFGP 139
           EL + SRPPPG  P L +    L  GP
Sbjct: 14  ELVRASRPPPGFPPVLAVSNLDLILGP 40


>04_04_0806 -
           28186486-28186701,28187047-28187341,28189800-28189942,
           28190041-28190095,28190181-28190223,28190411-28190486,
           28190708-28190826,28190917-28191487
          Length = 505

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 459 VQCSQHIGPVHKDLQPS 409
           VQC  H G VH+DL+PS
Sbjct: 365 VQCIHHEGIVHRDLKPS 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,214,550
Number of Sequences: 37544
Number of extensions: 388149
Number of successful extensions: 941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)