Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m01
         (669 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT015203-1|AAT94432.1|  841|Drosophila melanogaster RE65032p pro...   219   3e-57
AE013599-3356|AAF46817.3|  631|Drosophila melanogaster CG5625-PB...   218   6e-57
AE013599-3355|AAF46816.3|  612|Drosophila melanogaster CG5625-PA...   217   9e-57
BT016052-1|AAV36937.1|  287|Drosophila melanogaster LP18184p pro...    31   1.9  
AE013599-3223|AAM70921.1|  284|Drosophila melanogaster CG30287-P...    31   1.9  
AY061151-1|AAL28699.1|  948|Drosophila melanogaster LD12377p pro...    30   3.3  
AE014297-3194|AAX52971.1|  993|Drosophila melanogaster CG31156-P...    30   3.3  
AE014297-3193|AAF56028.3|  948|Drosophila melanogaster CG31156-P...    30   3.3  
BT003570-1|AAO39574.1|  614|Drosophila melanogaster LD45290p pro...    29   5.7  
AY058496-1|AAL13725.1|  647|Drosophila melanogaster LD03170p pro...    29   5.7  
AF255674-1|AAG18329.1|  647|Drosophila melanogaster rho guanine ...    29   5.7  
AE014296-1222|AAN12050.1|  600|Drosophila melanogaster CG8606-PB...    29   5.7  
AE014296-1221|AAF50584.1|  647|Drosophila melanogaster CG8606-PA...    29   5.7  
L23195-1|AAA60323.1| 4639|Drosophila melanogaster cytoplasmic dy...    28   10.0 
AE014296-904|AAN11615.1| 3388|Drosophila melanogaster CG7507-PB,...    28   10.0 
AE014296-903|AAF47942.3| 4639|Drosophila melanogaster CG7507-PA,...    28   10.0 

>BT015203-1|AAT94432.1|  841|Drosophila melanogaster RE65032p
           protein.
          Length = 841

 Score =  219 bits (535), Expect = 3e-57
 Identities = 110/182 (60%), Positives = 133/182 (73%)
 Frame = +3

Query: 123 IGLVTQAQMTNQVSPVEEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGEL 302
           I L   A +    + +++QEKLL EA+ + + QAFQM   LDK +++D+LK ASTMLGEL
Sbjct: 30  ISLRPNAAVMTMPNGLDDQEKLLAEAIGLARKQAFQMNHFLDKERMLDSLKCASTMLGEL 89

Query: 303 RTSLLSPKSYYELYMAITDXXXXXXXXXXXXFQKGRKVADLYELVQYAGNIVPRLYLLIT 482
           RTS+LSPKSYYELYMA+T+             +K  K  DLYELVQY+  IVPRLYLLIT
Sbjct: 90  RTSVLSPKSYYELYMAVTNELCHLELYLS---EKIDKKTDLYELVQYSHTIVPRLYLLIT 146

Query: 483 VGLVYIKTNTNLRRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCXRNVLPDTHEAPNENEG 662
           VG+VYIK +  L+R +LKDLVEMCRGVQHPLRGLFLRNYLLQC RN+LPD     NE+EG
Sbjct: 147 VGIVYIKNDPTLKRSILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDVMVEENEHEG 206

Query: 663 TV 668
            V
Sbjct: 207 NV 208


>AE013599-3356|AAF46817.3|  631|Drosophila melanogaster CG5625-PB,
           isoform B protein.
          Length = 631

 Score =  218 bits (532), Expect = 6e-57
 Identities = 108/176 (61%), Positives = 131/176 (74%)
 Frame = +3

Query: 141 AQMTNQVSPVEEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGELRTSLLS 320
           A +    + +++QEKLL EA+ + + QAFQM   LDK +++D+LK ASTMLGELRTS+LS
Sbjct: 17  ANVRTMPNGLDDQEKLLAEAIGLARKQAFQMNHFLDKERMLDSLKCASTMLGELRTSVLS 76

Query: 321 PKSYYELYMAITDXXXXXXXXXXXXFQKGRKVADLYELVQYAGNIVPRLYLLITVGLVYI 500
           PKSYYELYMA+T+             +K  K  DLYELVQY+  IVPRLYLLITVG+VYI
Sbjct: 77  PKSYYELYMAVTNELCHLELYLS---EKIDKKTDLYELVQYSHTIVPRLYLLITVGIVYI 133

Query: 501 KTNTNLRRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCXRNVLPDTHEAPNENEGTV 668
           K +  L+R +LKDLVEMCRGVQHPLRGLFLRNYLLQC RN+LPD     NE+EG V
Sbjct: 134 KNDPTLKRSILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDVMVEENEHEGNV 189


>AE013599-3355|AAF46816.3|  612|Drosophila melanogaster CG5625-PA,
           isoform A protein.
          Length = 612

 Score =  217 bits (531), Expect = 9e-57
 Identities = 107/167 (64%), Positives = 128/167 (76%)
 Frame = +3

Query: 168 VEEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGELRTSLLSPKSYYELYM 347
           +++QEKLL EA+ + + QAFQM   LDK +++D+LK ASTMLGELRTS+LSPKSYYELYM
Sbjct: 7   LDDQEKLLAEAIGLARKQAFQMNHFLDKERMLDSLKCASTMLGELRTSVLSPKSYYELYM 66

Query: 348 AITDXXXXXXXXXXXXFQKGRKVADLYELVQYAGNIVPRLYLLITVGLVYIKTNTNLRRD 527
           A+T+             +K  K  DLYELVQY+  IVPRLYLLITVG+VYIK +  L+R 
Sbjct: 67  AVTNELCHLELYLS---EKIDKKTDLYELVQYSHTIVPRLYLLITVGIVYIKNDPTLKRS 123

Query: 528 LLKDLVEMCRGVQHPLRGLFLRNYLLQCXRNVLPDTHEAPNENEGTV 668
           +LKDLVEMCRGVQHPLRGLFLRNYLLQC RN+LPD     NE+EG V
Sbjct: 124 ILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDVMVEENEHEGNV 170


>BT016052-1|AAV36937.1|  287|Drosophila melanogaster LP18184p
           protein.
          Length = 287

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 28/81 (34%), Positives = 38/81 (46%)
 Frame = +3

Query: 57  LIVNAYEFSSNLQKNLIWFFNCIGLVTQAQMTNQVSPVEEQEKLLEEALNIVKVQAFQMK 236
           L++  Y +SSN+ KNL+  FN  G        N  SPV +Q  L    L+    Q F  +
Sbjct: 160 LLMGDYTWSSNILKNLV-KFNTTGWGRTESRIN--SPVLQQASLTHHHLSYC-AQVFGKQ 215

Query: 237 RCLDKSKLMDALKHASTMLGE 299
             LDKS +  A    ST  G+
Sbjct: 216 --LDKSHICVASSTGSTCQGD 234


>AE013599-3223|AAM70921.1|  284|Drosophila melanogaster CG30287-PA
           protein.
          Length = 284

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 28/81 (34%), Positives = 38/81 (46%)
 Frame = +3

Query: 57  LIVNAYEFSSNLQKNLIWFFNCIGLVTQAQMTNQVSPVEEQEKLLEEALNIVKVQAFQMK 236
           L++  Y +SSN+ KNL+  FN  G        N  SPV +Q  L    L+    Q F  +
Sbjct: 157 LLMGDYTWSSNILKNLV-KFNTTGWGRTESRIN--SPVLQQASLTHHHLSYC-AQVFGKQ 212

Query: 237 RCLDKSKLMDALKHASTMLGE 299
             LDKS +  A    ST  G+
Sbjct: 213 --LDKSHICVASSTGSTCQGD 231


>AY061151-1|AAL28699.1|  948|Drosophila melanogaster LD12377p
           protein.
          Length = 948

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 492 VYIKTNTNLRRDLLKDLVE--MCRGVQHPLRGLFLRNYLLQC 611
           V I+TN  L+RDL++ + +  M +G+Q+PLR       L +C
Sbjct: 440 VKIETNDYLKRDLMRYITDQYMNQGLQYPLRREVFTKSLEEC 481


>AE014297-3194|AAX52971.1|  993|Drosophila melanogaster CG31156-PB,
           isoform B protein.
          Length = 993

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 492 VYIKTNTNLRRDLLKDLVE--MCRGVQHPLRGLFLRNYLLQC 611
           V I+TN  L+RDL++ + +  M +G+Q+PLR       L +C
Sbjct: 440 VKIETNDYLKRDLMRYITDQYMNQGLQYPLRREVFTKSLEEC 481


>AE014297-3193|AAF56028.3|  948|Drosophila melanogaster CG31156-PA,
           isoform A protein.
          Length = 948

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 492 VYIKTNTNLRRDLLKDLVE--MCRGVQHPLRGLFLRNYLLQC 611
           V I+TN  L+RDL++ + +  M +G+Q+PLR       L +C
Sbjct: 440 VKIETNDYLKRDLMRYITDQYMNQGLQYPLRREVFTKSLEEC 481


>BT003570-1|AAO39574.1|  614|Drosophila melanogaster LD45290p
           protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +3

Query: 144 QMTNQVSPVEEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGELRTSLLSP 323
           Q+    SP +   KLL+E++  ++  A  +  C+++ ++   L H    L     +++ P
Sbjct: 181 QVLLYTSPADADYKLLKESVKEIEATASHINTCVEEQEITQYLIHLQNSLVNRTPNIVKP 240


>AY058496-1|AAL13725.1|  647|Drosophila melanogaster LD03170p
           protein.
          Length = 647

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +3

Query: 144 QMTNQVSPVEEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGELRTSLLSP 323
           Q+    SP +   KLL+E++  ++  A  +  C+++ ++   L H    L     +++ P
Sbjct: 214 QVLLYTSPADADYKLLKESVKEIEATASHINTCVEEQEITQYLIHLQNSLVNRTPNIVKP 273


>AF255674-1|AAG18329.1|  647|Drosophila melanogaster rho guanine
           nucleotide exchangefactor 4 protein.
          Length = 647

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +3

Query: 144 QMTNQVSPVEEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGELRTSLLSP 323
           Q+    SP +   KLL+E++  ++  A  +  C+++ ++   L H    L     +++ P
Sbjct: 214 QVLLYTSPADADYKLLKESVKEIEATASHINTCVEEQEITQYLIHLQNSLVNRTPNIVKP 273


>AE014296-1222|AAN12050.1|  600|Drosophila melanogaster CG8606-PB,
           isoform B protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +3

Query: 144 QMTNQVSPVEEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGELRTSLLSP 323
           Q+    SP +   KLL+E++  ++  A  +  C+++ ++   L H    L     +++ P
Sbjct: 167 QVLLYTSPADADYKLLKESVKEIEATASHINTCVEEQEITQYLIHLQNSLVNRTPNIVKP 226


>AE014296-1221|AAF50584.1|  647|Drosophila melanogaster CG8606-PA,
           isoform A protein.
          Length = 647

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +3

Query: 144 QMTNQVSPVEEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGELRTSLLSP 323
           Q+    SP +   KLL+E++  ++  A  +  C+++ ++   L H    L     +++ P
Sbjct: 214 QVLLYTSPADADYKLLKESVKEIEATASHINTCVEEQEITQYLIHLQNSLVNRTPNIVKP 273


>L23195-1|AAA60323.1| 4639|Drosophila melanogaster cytoplasmic dynein
            heavy chian protein.
          Length = 4639

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +3

Query: 90   LQKNLIWFFNCIGLVTQAQMTNQVSPVEEQEKLLEEALNIVKVQAFQMKRCLDKSK---L 260
            L   ++W  +    + QA   NQ  P++     +E  LN++     Q +  L + K   L
Sbjct: 1741 LAAQILWSEDVESALQQASENNQSKPMQRVLGNVESTLNVLADSVLQEQPPLRRRKLEHL 1800

Query: 261  MDALKHASTMLGE-LRTSLLSPKSY 332
            ++   H  T+    L   + SPKS+
Sbjct: 1801 INEFVHKRTVTRRLLNNGVTSPKSF 1825


>AE014296-904|AAN11615.1| 3388|Drosophila melanogaster CG7507-PB,
            isoform B protein.
          Length = 3388

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +3

Query: 90   LQKNLIWFFNCIGLVTQAQMTNQVSPVEEQEKLLEEALNIVKVQAFQMKRCLDKSK---L 260
            L   ++W  +    + QA   NQ  P++     +E  LN++     Q +  L + K   L
Sbjct: 1741 LAAQILWSEDVESALQQASENNQSKPMQRVLGNVESTLNVLADSVLQEQPPLRRRKLEHL 1800

Query: 261  MDALKHASTMLGE-LRTSLLSPKSY 332
            ++   H  T+    L   + SPKS+
Sbjct: 1801 INEFVHKRTVTRRLLNNGVTSPKSF 1825


>AE014296-903|AAF47942.3| 4639|Drosophila melanogaster CG7507-PA,
            isoform A protein.
          Length = 4639

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +3

Query: 90   LQKNLIWFFNCIGLVTQAQMTNQVSPVEEQEKLLEEALNIVKVQAFQMKRCLDKSK---L 260
            L   ++W  +    + QA   NQ  P++     +E  LN++     Q +  L + K   L
Sbjct: 1741 LAAQILWSEDVESALQQASENNQSKPMQRVLGNVESTLNVLADSVLQEQPPLRRRKLEHL 1800

Query: 261  MDALKHASTMLGE-LRTSLLSPKSY 332
            ++   H  T+    L   + SPKS+
Sbjct: 1801 INEFVHKRTVTRRLLNNGVTSPKSF 1825


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,044,368
Number of Sequences: 53049
Number of extensions: 682012
Number of successful extensions: 1845
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1842
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)