Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m01
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    29   0.053
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    29   0.053
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   3.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   4.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 28.7 bits (61), Expect = 0.053
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 513 NLRRDLLKDLVEMCRGVQHPLRGLFLRNYLL 605
           NL++D+   L  +C  + +  RG+F +NYLL
Sbjct: 346 NLQKDVCSKLKGLCPSMANYDRGVFYKNYLL 376


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 28.7 bits (61), Expect = 0.053
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 513 NLRRDLLKDLVEMCRGVQHPLRGLFLRNYLL 605
           NL++D+   L  +C  + +  RG+F +NYLL
Sbjct: 436 NLQKDVCSKLKGLCPSMANYDRGVFYKNYLL 466


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 397 SKREGRLQIFMNWSNMLGTLYLD 465
           SKR   L +F +WSN    L+ D
Sbjct: 662 SKRPDLLHLFGSWSNRPNLLFKD 684


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 397 SKREGRLQIFMNWSNMLGTLYLD 465
           SKR   L +F +WSN    L+ D
Sbjct: 662 SKRPDLLHLFGSWSNRPNLLFKD 684


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 397 SKREGRLQIFMNWSNMLGTLYLD 465
           SKR   L +F +WSN    L+ D
Sbjct: 662 SKRPDLLHLFGSWSNRPNLLFKD 684


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 401 KGKEGCRSL*TGPICWEH 454
           KGK+ C+    GP+ W++
Sbjct: 340 KGKDACQMDSGGPVLWQN 357


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 438 GPVHKDLQPSFPFGTPPEDTAPG 370
           G VH  +     +GTP E+  PG
Sbjct: 7   GKVHFGVDDVSLYGTPKEEPGPG 29


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 438 GPVHKDLQPSFPFGTPPEDTAPG 370
           G VH  +     +GTP E+  PG
Sbjct: 7   GKVHFGVDDVSLYGTPKEEPGPG 29


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 438 GPVHKDLQPSFPFGTPPEDTAPG 370
           G VH  +     +GTP E+  PG
Sbjct: 7   GKVHFGVDDVSLYGTPKEEPGPG 29


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 87  NLQKNLIWFFNCIGLVTQAQMTNQVSP 167
           NL+  LI+F   IGL T      Q  P
Sbjct: 215 NLENKLIYFIEDIGLNTYYFFLRQAFP 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,364
Number of Sequences: 438
Number of extensions: 4174
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)