Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30l22
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535...    27   6.3  
02_02_0397 - 9763789-9763924,9764264-9764439,9764569-9764686,976...    27   6.3  

>08_02_1339 +
           26252609-26252925,26253025-26253227,26253379-26253536,
           26253802-26253870,26253980-26254461,26254558-26254766,
           26254865-26254901,26254991-26255075,26255186-26255269,
           26255344-26255412,26255520-26255663
          Length = 618

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 97  KRTSLSFYLRNSSIHLFS 150
           KRT++ FYL N++IH F+
Sbjct: 173 KRTTIHFYLMNTAIHSFN 190


>02_02_0397 -
           9763789-9763924,9764264-9764439,9764569-9764686,
           9764813-9765088,9765200-9765267,9765386-9766005,
           9766229-9766381,9768793-9768890,9769016-9769107,
           9769212-9769295
          Length = 606

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 372 FVIIITFTVHRENCSFFFIAYTGERAHSPPGV 467
           FV+++   V     S  +I Y GE+ H  P V
Sbjct: 13  FVLLLVLPVFANASSRLYIVYMGEKKHDDPSV 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,726,609
Number of Sequences: 37544
Number of extensions: 183500
Number of successful extensions: 402
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)