Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30l21
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    29   0.37 
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    28   0.87 
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    27   1.5  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   3.5  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   4.6  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   6.1  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   6.1  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   6.1  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   8.1  

>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 132 ILSLKRIFCIFQYRKQPARYVINLPHEEIDNLYNKLNWERTRRL 1
           ++S      +F+Y     +YV+ L  +E++N+Y   N +  +R+
Sbjct: 320 VISTLESLSVFKYDPLKKKYVLQLKRDELENVYKAWNIKHPQRV 363


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 154 GNVHHGEDIVVETHFLHLSISQTARAL 74
           GN+HH  D   ET  +HL+IS  A A+
Sbjct: 195 GNLHHAGDHEEETVHIHLTISLFASAI 221


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 1   KPARSLPIQFVVQIINFLVRQID-YIARGLFAILKDAKNAFQRQYLHHGG 147
           KP    P  F+  I+N  +  ID  I   L  +L++ +  +  +++H+GG
Sbjct: 101 KPCYEQPDDFISYIVNTKIDSIDESIIHKLALLLRNEQVIWVEKFIHNGG 150


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 243  SNLRPIACEIPLSHFKELVESNDFLLCFNLET 148
            +NL  + CEIP+  F+  VE +  LL F  ET
Sbjct: 920  ANLIELICEIPVCMFEPTVELSPILL-FQYET 950


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 438 EIGAGETRVFSVLLTNNLFYCNTMIIQH 355
           E+   + R+FS  +   L YCNT+I  H
Sbjct: 439 ELDFEKQRLFSACIEVYLSYCNTLIFLH 466


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 174 FLLCFNLETSTMVKILSLK-RIFCIF 100
           FLL F L T+  ++ILSL    FC+F
Sbjct: 23  FLLTFFLLTTCQLRILSLSINAFCVF 48


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 275 ATVKAFRLQ*KAICDRLLVKFRCLILKSWWKAMTFYYVSIWKRPPW 138
           +T+ AF L    + D +L+ F   +L SW      +++SI +  PW
Sbjct: 212 STIGAFDLDPNKVLDLILLLFSENLLDSW-----RFFLSILRNSPW 252


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 82  GLFAILKDAKNAFQRQYLHHGG---RF-QIET**KVIAFHQLFKMRQRNFTSNRSQIAFY 249
           G+ A +   K     + L++GG    F  ++T   V+ +  L   RQR  T N + I+F 
Sbjct: 32  GIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDY--LPAERQRGITINSAAISFT 89

Query: 250 WRRNALTV 273
           WR   + +
Sbjct: 90  WRNQRINL 97


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 484 SVRHHSVLEPVNAHHRNRCGRN 419
           S + ++V+EP++ HH    GRN
Sbjct: 13  SYKDYTVIEPLSPHHNVIVGRN 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,401
Number of Sequences: 5004
Number of extensions: 51415
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)