Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30l21
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0031 - 305457-305663,306248-306523,306824-307609                 32   0.29 
10_02_0112 + 5385660-5385821,5386337-5386876                           31   0.89 
08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720     30   1.2  
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910...    28   4.7  
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971...    27   8.2  
09_03_0027 - 11690348-11690828,11694815-11695749                       27   8.2  
01_01_0297 - 2437487-2437777,2438088-2438123                           27   8.2  

>06_01_0031 - 305457-305663,306248-306523,306824-307609
          Length = 422

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
 Frame = -2

Query: 375 NTMIIQHENPKCP----IEFTYPETDMQSACSALLKN-RNGQSVPPPIKSNLRPIACEIP 211
           NT+++  E  KCP    IE   PE D  + C A+ K    G       + + +  A  I 
Sbjct: 227 NTVVVNKEQKKCPFSVKIEEIPPEEDNTAGCVAIRKAFALGNGKAKKKELSPQDAALLIQ 286

Query: 210 LSHFKELVESNDFLLCFNLETSTMVKILSLKRIFCIFQYRKQPA 79
           L++   L   +  L C         K+  ++ +F    YR + A
Sbjct: 287 LNYRAHLAHRSQVLRCLRDLAVAKAKLKEIRSLFYNISYRHRMA 330


>10_02_0112 + 5385660-5385821,5386337-5386876
          Length = 233

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
 Frame = -2

Query: 390 NLFYCNTMIIQHENPKCPIEFTYPETDMQSACSALLK-NRNGQSVPPPIKSNLRPIACEI 214
           +LF CN + +      C     Y  + + S  S LLK  RN    PP + S++  I    
Sbjct: 34  SLFQCNGVCM------CLSTLRYLSSSLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRK 87

Query: 213 PLSHFKELVESNDFLLCFNLETSTMVKILSLKRI 112
           PL             LCFN +  T+  I   KR+
Sbjct: 88  PLPPVSFKEWDGLVRLCFNRKNKTLGAIFKQKRV 121


>08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720
          Length = 239

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 519 DVNIDSRSPKKTASA---TIVYWNPLMPITEIGAGETRVFSVLLTNNLFYCNTMIIQHEN 349
           DVN+D R    TA+    T    NP  P+    AG+ R FS       FY +  +  H+N
Sbjct: 22  DVNLDLRLVHSTAAGRQHTAATRNPAPPLA--AAGDDRAFSCTYCRRRFYSSQALGGHQN 79


>03_06_0520 -
           34487664-34488274,34488785-34488974,34489585-34491045,
           34491149-34491163
          Length = 758

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = -2

Query: 339 PIEFTYPETDMQSACSALLKNRNGQSVPPPIKSNLRPIACEIPLSHFKELVESND 175
           P+    P TD  S CS  LK  N   V P I   +    CE+       L   ND
Sbjct: 529 PVSILEPPTDEDSCCSGYLK--NDSQVMPSIDKQI--YGCELRYEQEVSLSSDND 579


>12_02_0439 +
           19096711-19096713,19096819-19096893,19097037-19097111,
           19097225-19097297,19097536-19097580,19098217-19098328,
           19098794-19098866,19099178-19099222,19100216-19100271,
           19100370-19100545,19101289-19101476
          Length = 306

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 348 PKCPIEFTYPETDMQSACSALLKNRNGQSVPPPIKSNLRPIACEI 214
           P C I   +  +D +S     +KN NG++V  P+  +L  I+ E+
Sbjct: 10  PPCDISIAF--SDARSRKQIAVKNDNGRTVMVPVFQSLETISGEV 52


>09_03_0027 - 11690348-11690828,11694815-11695749
          Length = 471

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 79  RGLFAILKDAKNAFQRQYLHHGGRFQIET**KVIAF 186
           + + AI+ D + AF+   +H GG+  I+   K++AF
Sbjct: 327 KAVAAIVPDFQRAFEHMCIHSGGKAVIDAVVKLMAF 362


>01_01_0297 - 2437487-2437777,2438088-2438123
          Length = 108

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 453 LMPITEIGAGETRVFSVLLTNNLFYCNTMIIQHENPKCPIEFTYPE 316
           +M I        +V    L+ N  + N  + Q  NPKCP   +Y +
Sbjct: 24  IMGIVSEDVDTNKVSITQLSRNSKHINDTVFQTPNPKCPTTTSYAD 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,259,604
Number of Sequences: 37544
Number of extensions: 334051
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)