Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30l21
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   8.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 501 RSPKKTASATIVYWNPLMPITEIGAGETRVFSVLLTNNLFYCNT 370
           R PKK   AT+VY++    +T +G       S+    ++F+  T
Sbjct: 52  RPPKKDGQATVVYFH----VTVMGLDSIDENSMTYAADIFFAQT 91


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 345 KCPIEFTYPETDMQSACSALLKNRNGQSVPPP 250
           K PIEFT    + +     +LK    QS P P
Sbjct: 590 KNPIEFTDLSNERKYEDVCVLKTDTNQSCPSP 621


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 1   KPARSLPIQFVVQIINFLVRQIDYIARGLFAI 96
           KP + +P+Q  +   N +++ I+++ + L AI
Sbjct: 54  KPGKLVPLQCDLSNQNDILKVIEWVEKNLGAI 85


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 197 KSWWKAMTFYYV 162
           K WWK   FY V
Sbjct: 22  KGWWKNAIFYQV 33


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 277 PQRSKRSASNKKQFATDCL 221
           P+ + R   NKK   T+C+
Sbjct: 23  PETTPRRKKNKKPLPTECV 41


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -2

Query: 285 LKNRNGQSVPPPIKSNLRP-IACEIPLSH-FKELVESNDFLLCFNLETSTMVKIL 127
           L N+  +  P  +K++ R  ++   P+ + +K  +E+ + L  FN++T    KIL
Sbjct: 7   LANKFYRISPQILKNDKRIYLSPRTPIKNVYKNNIETKNQLSPFNIDTPNRQKIL 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,577
Number of Sequences: 438
Number of extensions: 3748
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)