Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30l20
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 206 2e-54
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 201 6e-53
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 32 0.078
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.24
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 27 2.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 3.9
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 3.9
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 5.1
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 25 6.8
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 6.8
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 6.8
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 6.8
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 9.0
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 9.0
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 9.0
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 9.0
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 9.0
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 206 bits (503), Expect = 2e-54
Identities = 104/189 (55%), Positives = 123/189 (65%)
Frame = +2
Query: 59 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 238
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 239 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 418
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 419 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVXVGHVDMTPDELAQN 598
LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL V VGHVDM ++LA N
Sbjct: 122 LLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAAN 181
Query: 599 VHLSINFLV 625
+ L+INFLV
Sbjct: 182 LSLAINFLV 190
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 201 bits (491), Expect = 6e-53
Identities = 101/189 (53%), Positives = 124/189 (65%)
Frame = +2
Query: 59 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 238
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 239 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 418
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 419 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVXVGHVDMTPDELAQN 598
LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL V VGHV+M+ ++L N
Sbjct: 122 LLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIAN 181
Query: 599 VHLSINFLV 625
+ L++NFLV
Sbjct: 182 IMLAVNFLV 190
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 31.9 bits (69), Expect = 0.078
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +2
Query: 392 ESLIKQIPRLLGPGLNKAGKFPGLLSHQ----ESMTQKIDEVKGTIKFQMKKVLCLSVXV 559
+ +I +PR+LG + K P + E + +++ G F +
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKC 203
Query: 560 GHVDMTPDELAQNVHLSINFL 622
GHV T ELA+NV + F+
Sbjct: 204 GHVSNTSTELAENVESILQFV 224
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.24
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +2
Query: 41 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 205
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 585 SSGVMSTWPTXTERHNTFFIWNLMVPLTSSIFC 487
S+G ++ T T R F WN+++ +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +1
Query: 526 NEEGVVSFCXSWPCGHDS**ACSECASFHQLPCV 627
NE C W C D C++C ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 3.9
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = -2
Query: 281 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 102
P H A LQE A AA+ L+ ++NA G +S D +AL P S +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373
Query: 101 RHSRTRRACH 72
HS+++ + H
Sbjct: 374 SHSQSQNSLH 383
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 505 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 398
D L RH L + + F + Q GT+ NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 433 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGVV 543
F + W I P+ SLP G H +E PN+EG V
Sbjct: 36 FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 50 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 148
K K DT+ E A LQSS DK NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 367 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 266
+G+F+ +LF LIQ + + W + + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +2
Query: 92 VNAVLQSSKDKKRNFLETV 148
+NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 202 GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKN 101
G L LW IV+ T L + F VLR L N
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSN 1217
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -1
Query: 168 FRPI*SSTVSKKLRFLSLED*RTAFTHS*SVSRDTLDDILFVREPPITTLGSCK 7
F + S K ++ E+ + +F + SV++D+ D +++ P+T + SC+
Sbjct: 96 FNVVKESNDKPKENLVTSEECKASFFSTDSVNKDSTIDYDALQKDPLTYVKSCR 149
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 71 RDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRF 199
++ L++ V SK+ + T+E Q+ N+D QK F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +2
Query: 68 SRDTLYECVNAVLQSSKDKK--RNFLETVELQIGLKN--YDPQKDKRFSGTVKLKYI 226
S DT Y VNA +DKK RN TV + G + P ++ K+ YI
Sbjct: 713 SPDTSYSLVNAFAYCDRDKKNVRNCSFTVIFRDGSEETLCAPTEESMIEWVAKINYI 769
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 396 H*SSRFPVCWVPV*TKLVNSLVFSPTRS 479
H S RFP PV T L NSL++ T S
Sbjct: 903 HVSGRFPQVSSPVNTALSNSLLYIRTLS 930
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,640
Number of Sequences: 5004
Number of extensions: 52836
Number of successful extensions: 165
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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