Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30l17
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    30   1.2  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   5.0  
10_08_0742 + 20244984-20247008                                         28   6.7  
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    28   6.7  
03_05_1070 + 30125131-30127029                                         28   6.7  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 607 ADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 494
           ADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 122 ADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLS 491
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>10_08_0742 + 20244984-20247008
          Length = 674

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 565 ASPPSTETVAAGGKNNCAWRSVQECDSVLRLDGTGKVVINLTISRV 428
           + P +  T   GGK N    S Q   + +  DG+ K ++N+TI+ V
Sbjct: 174 SEPAAYFTDGGGGKRNLTLESAQPIQAWVDYDGSAK-ILNVTIAPV 218


>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 465  PVKWSLISRSHEYNYVLNNGSTELCHETSCGV 370
            PVK S +S    Y ++   G   LCH T  G+
Sbjct: 964  PVKISYVSLQLLYGFLFWKGKKNLCHNTDQGI 995


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 538 AAGGKNNCAWRSVQECDS-VLRLD 470
           A GG+   AWRS    DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,899,412
Number of Sequences: 37544
Number of extensions: 300990
Number of successful extensions: 809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)