Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30l12
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890...    30   1.1  
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    28   4.3  
12_02_1131 - 26358339-26360609                                         27   5.6  
07_03_0617 + 19992304-19992798,19992926-19993364,19993457-199936...    27   9.8  

>06_03_1384 +
           29786028-29786657,29788581-29788711,29788987-29789028,
           29789383-29789441,29789774-29790070,29790180-29790289,
           29790966-29791070,29791201-29791263,29791766-29791933,
           29792111-29792248
          Length = 580

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 280 YRALDLESGAAAATAQYMFQQYMEYASVAGPNYDDFDLIKQRVV 411
           YR +D E   AAA + Y  +    +  +AG  +  F+    RV+
Sbjct: 485 YRRMDFEEFCAAAISPYQLEALERWEEIAGTAFQQFEQEGNRVI 528


>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
            7472855-7473019,7473689-7474821,7474902-7475426,
            7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 175  GPSAGTDSRESALPARESQQTMQLIMQS 92
            G   G  S  SA+PA E + T+QL+ QS
Sbjct: 1203 GYENGHGSSRSAMPAEEQRNTLQLLNQS 1230


>12_02_1131 - 26358339-26360609
          Length = 756

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 241 AACRNAYKSVYYKYRALDLESGAAAATAQYMFQQYMEYASVAGPNYDDFDLIKQRVVPHT 420
           A C   Y +     R+LD+      +TA +  +  ++  S   P  +DF L+ + V P  
Sbjct: 267 AGCLCVYPAYLSSERSLDIWLLTDYSTATWELRCRIDPTSATSPETNDFFLVNREVTPLV 326

Query: 421 L 423
           L
Sbjct: 327 L 327


>07_03_0617 +
           19992304-19992798,19992926-19993364,19993457-19993644,
           19993806-19994123
          Length = 479

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 188 VLKMEIFIGPTMAITFPTPRAAMLTNQSIINIE 286
           V KM +F  PT+ +T P     + +NQ +I  E
Sbjct: 71  VSKMSVFGSPTVLLTGPAANRFVFSNQDLIITE 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,257,856
Number of Sequences: 37544
Number of extensions: 242074
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)