Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30l12
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34533-6|CAA84300.2|  371|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AY158690-1|AAN41642.1|  371|Caenorhabditis elegans choline kinas...    28   3.8  
AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin prote...    28   3.8  
U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm recept...    27   5.0  
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z34533-6|CAA84300.2|  371|Caenorhabditis elegans Hypothetical
           protein B0285.8 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 220 NGDNIPDAACRNAYKSVYYKYRALDLESGAAAATAQYMFQQYMEYASVAGPNYD 381
           + D I D        +VY KY A+D+         Q M +   EY  + G +Y+
Sbjct: 117 DSDCILDPEISRRVGAVYPKYHAIDVPVSKKRRCFQVMRESLKEYQDLGGGDYE 170


>AY158690-1|AAN41642.1|  371|Caenorhabditis elegans choline kinase
           CKB-1 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 220 NGDNIPDAACRNAYKSVYYKYRALDLESGAAAATAQYMFQQYMEYASVAGPNYD 381
           + D I D        +VY KY A+D+         Q M +   EY  + G +Y+
Sbjct: 117 DSDCILDPEISRRVGAVYPKYHAIDVPVSKKRRCFQVMRESLKEYQDLGGGDYE 170


>AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin protein
           16 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 187 CFKDGNFYWPHNGDNIPDAACRNAYKSVYYKY 282
           CF +  ++ P    N+P A  R   + +YY++
Sbjct: 74  CFIENTYFVPMQDSNLPAAETREGREMIYYQW 105


>U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm receptor
           protein 135 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +2

Query: 242 PRAAMLTNQSIINIELSI*NPGRPLPQRNTCFNSIWNTRLWPVLIMTILT*SNKGLCRTH 421
           P   M  +  ++ +  SI N   PL +  TC + + +  +  +L    +      +CRTH
Sbjct: 67  PVGHMKGSMFVVFMHSSILNATNPLAEFLTCLHCVLSGFVASLLACQFIF-RYLAVCRTH 125

Query: 422 FAVPVQTIAILCL 460
           F V +Q I  LCL
Sbjct: 126 FLVHLQGIN-LCL 137


>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical protein
            T21C9.6 protein.
          Length = 1215

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 346  YTVETCIALWQRPPRILNRELDIYNRLICKHCGTRRR 236
            +T+++ +A  +   + +  E DI + L CK  G RRR
Sbjct: 955  HTIKSMLACPETSGKTIENEDDIIDNLKCKPTGIRRR 991


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,204,477
Number of Sequences: 27780
Number of extensions: 199061
Number of successful extensions: 459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)