Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30l07
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 27 1.7
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 27 3.0
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 26 5.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.2
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 25 6.9
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M... 25 6.9
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.1
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 9.1
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.1
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +1
Query: 196 QSDALPRPVMPKKKRGRPPNNVKT-----DSRVPGHMTTRHAEPCAEAPRLSPAAGGMVG 360
QS+++P ++PK+ P NN+K+ DS + + +E ++ +P
Sbjct: 6 QSESIPHEILPKEPFDLPMNNLKSSPKNKDSEKRINNSIAESEQVVDSALSNPETNANED 65
Query: 361 LAPVPQPSSNEMLVQE 408
+ PS N ++++
Sbjct: 66 IIAPQLPSQNSEIIEK 81
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 475 LRAISNPVGLLHTPPLVREDA 413
+R IS P+GL+H PLV A
Sbjct: 544 IRIISGPLGLVHPDPLVASHA 564
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 229 KKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPA 342
+KK+G PN ++TDS T + P A LSP+
Sbjct: 589 QKKKGNVPNAIETDS---SPSDTISSSPTVRAVNLSPS 623
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Frame = +1
Query: 217 PVMPKKKRGRP---PNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPS 384
P +PK G P P S +P A P + P V PVP+PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPS 1108
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = +1
Query: 217 PVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEM 396
P +PK PP + P P P VG+ PVP PS+
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Query: 397 L-VQERGRPP 423
+ G PP
Sbjct: 1219 VPTPSAGLPP 1228
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 471 RRPFQFHQDRWASKGSARRGGIC*QLPERLRRRPNSSRVAASRMNLLPNRN 623
+RP + ++ A +GS R G+C ++ ++PNS+ +R+ L R+
Sbjct: 33 KRPEKTNKQSVALEGSPFRRGVCTRVFTVKPKKPNSAVRKVARVRLSTGRS 83
>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 155
Score = 25.4 bits (53), Expect = 6.9
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Frame = +1
Query: 61 VPKRDGPYRIVKKVSPTTYHVAHVDKPDEVLGKY-----HVNDLTLYRENQSDALPRPVM 225
VP+R P P T + + + P +Y H N T EN + +P P
Sbjct: 57 VPRRS-PTSPQSAYVPATVYTSPIGSPRRGSVRYTHVMAHPNTTTTVSENLPEEVPPPYS 115
Query: 226 PKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSP 339
P P N + + H P + P P
Sbjct: 116 PAATASNTPQNEASPAATE---AVNHERPASPPPVYRP 150
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 450 PTGLLMARRPFQFHQ 494
PTG + + PFQFHQ
Sbjct: 191 PTGSVNSNMPFQFHQ 205
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 211 PRPVMPKKKRGR 246
PRPV+PK +RGR
Sbjct: 285 PRPVIPKGRRGR 296
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -2
Query: 318 STWFSMPCRHMPWNSRICFNIIWGTTTFLF 229
S W +P PW ++ F + G ++LF
Sbjct: 176 SNWMLLPISANPWYIQVAFCVTSGFFSYLF 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,318
Number of Sequences: 5004
Number of extensions: 52538
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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