Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30l07
(637 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U75308-1|AAC50901.1| 947|Homo sapiens TBP-associated factor pro... 38 0.039
AL137077-3|CAI11046.1| 949|Homo sapiens TAF4 RNA polymerase II,... 37 0.069
AL109911-3|CAI19183.1| 949|Homo sapiens TAF4 RNA polymerase II,... 37 0.069
Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase... 35 0.21
AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 35 0.21
AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 35 0.21
AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 35 0.21
AK000226-1|BAA91021.1| 651|Homo sapiens protein ( Homo sapiens ... 35 0.28
AF301909-1|AAG33495.1| 845|Homo sapiens mu-protocadherin protein. 35 0.28
AF258676-1|AAG16733.1| 845|Homo sapiens MUCDHL-FL protein. 35 0.28
AY358368-1|AAQ88734.1| 839|Homo sapiens MUCDHL protein. 34 0.37
AF258674-2|AAG16731.1| 845|Homo sapiens MUCDHL-FL protein. 34 0.49
BT007396-1|AAP36060.1| 405|Homo sapiens erythrocyte membrane pr... 31 2.6
BC052805-1|AAH52805.1| 383|Homo sapiens EPB49 protein protein. 31 2.6
BC017445-1|AAH17445.1| 405|Homo sapiens EPB49 protein protein. 31 2.6
BC006318-1|AAH06318.1| 405|Homo sapiens EPB49 protein protein. 31 2.6
AF214519-1|AAF73987.1| 464|Homo sapiens AMP-activated protein k... 31 2.6
M65030-1|AAA92977.1| 405|Homo sapiens alpha(1,3)-fucosyltransfe... 31 3.4
M58597-1|AAA63173.1| 530|Homo sapiens ELAM-1 ligand fucosyltran... 31 3.4
M58596-1|AAA63172.1| 405|Homo sapiens ELAM-1 ligand fucosyltran... 31 3.4
BC098277-1|AAH98277.1| 489|Homo sapiens protein kinase, AMP-act... 31 3.4
BC098102-1|AAH98102.1| 489|Homo sapiens protein kinase, AMP-act... 31 3.4
BC024290-1|AAH24290.1| 329|Homo sapiens deoxynucleotidyltransfe... 31 3.4
BC009535-1|AAH09535.1| 212|Homo sapiens DNTTIP1 protein protein. 31 3.4
AL050348-11|CAI21036.1| 231|Homo sapiens deoxynucleotidyltransf... 31 3.4
AL050348-9|CAI21034.1| 279|Homo sapiens deoxynucleotidyltransfe... 31 3.4
AL050348-7|CAC17441.1| 329|Homo sapiens deoxynucleotidyltransfe... 31 3.4
AJ249977-1|CAB65117.1| 492|Homo sapiens AMP-activated protein k... 31 3.4
AB035676-1|BAB62888.1| 329|Homo sapiens TdT binding protein pro... 31 3.4
U28389-1|AAC50223.1| 405|Homo sapiens dematin 52 kDa subunit pr... 31 4.5
U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 ... 31 4.5
U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 ... 31 4.5
M63473-1|AAA51558.1| 762|Homo sapiens alpha-5 type IV collagen ... 31 4.5
M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen ... 31 4.5
M31115-1|AAA52045.1| 772|Homo sapiens COL4A5 protein. 31 4.5
L19713-1|AAA58438.1| 383|Homo sapiens dematin protein. 31 4.5
AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha ... 31 4.5
AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha ... 31 4.5
AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha ... 31 4.5
AK025012-1|BAB15052.1| 295|Homo sapiens protein ( Homo sapiens ... 31 4.5
>U75308-1|AAC50901.1| 947|Homo sapiens TBP-associated factor
protein.
Length = 947
Score = 37.5 bits (83), Expect = 0.039
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +1
Query: 208 LPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
LP+P P PP T +R PGH A P + GG G AP P P++
Sbjct: 122 LPKPAAPAAAPPPPPPAPATLARPPGHPAGPPTAALAVPPPAAAQNGGSAGAAPAPAPAA 181
>AL137077-3|CAI11046.1| 949|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 949
Score = 36.7 bits (81), Expect = 0.069
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +1
Query: 208 LPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
LP+P P PP T +R PGH A P + GG G AP P P++
Sbjct: 124 LPKPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAA 183
Score = 29.9 bits (64), Expect = 7.9
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +1
Query: 211 PRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
P P + G P VP ++ AP +PAAGG G++ P P +
Sbjct: 139 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGA 197
>AL109911-3|CAI19183.1| 949|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 949
Score = 36.7 bits (81), Expect = 0.069
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +1
Query: 208 LPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
LP+P P PP T +R PGH A P + GG G AP P P++
Sbjct: 124 LPKPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAA 183
Score = 29.9 bits (64), Expect = 7.9
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +1
Query: 211 PRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
P P + G P VP ++ AP +PAAGG G++ P P +
Sbjct: 139 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGA 197
>Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase II
transcription factor protein.
Length = 1083
Score = 35.1 bits (77), Expect = 0.21
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +1
Query: 205 ALPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPS 384
A P P P PP T +R PGH A P + GG G AP P P+
Sbjct: 257 AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPA 316
Query: 385 S 387
+
Sbjct: 317 A 317
Score = 29.9 bits (64), Expect = 7.9
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +1
Query: 211 PRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
P P + G P VP ++ AP +PAAGG G++ P P +
Sbjct: 273 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGA 331
>AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 35.1 bits (77), Expect = 0.21
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +1
Query: 205 ALPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPS 384
A P P P PP T +R PGH A P + GG G AP P P+
Sbjct: 259 AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPA 318
Query: 385 S 387
+
Sbjct: 319 A 319
Score = 29.9 bits (64), Expect = 7.9
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +1
Query: 211 PRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
P P + G P VP ++ AP +PAAGG G++ P P +
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGA 333
>AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 35.1 bits (77), Expect = 0.21
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +1
Query: 205 ALPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPS 384
A P P P PP T +R PGH A P + GG G AP P P+
Sbjct: 259 AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPA 318
Query: 385 S 387
+
Sbjct: 319 A 319
Score = 29.9 bits (64), Expect = 7.9
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +1
Query: 211 PRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
P P + G P VP ++ AP +PAAGG G++ P P +
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGA 333
>AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 35.1 bits (77), Expect = 0.21
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +1
Query: 205 ALPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPS 384
A P P P PP T +R PGH A P + GG G AP P P+
Sbjct: 259 AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPA 318
Query: 385 S 387
+
Sbjct: 319 A 319
Score = 29.9 bits (64), Expect = 7.9
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +1
Query: 211 PRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
P P + G P VP ++ AP +PAAGG G++ P P +
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGA 333
>AK000226-1|BAA91021.1| 651|Homo sapiens protein ( Homo sapiens
cDNA FLJ20219 fis, clone COLF3371. ).
Length = 651
Score = 34.7 bits (76), Expect = 0.28
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 6/129 (4%)
Frame = +1
Query: 214 RPVMPKKKRGRP--PNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
RP G P N+ PG T + +P P + P G P PS
Sbjct: 345 RPPTSSTPGGSPGAENSTSHQPATPGGDTAQTPKPGTSQP-MPPGVGTSTSHQPAT-PSG 402
Query: 388 NEMLVQERGR----PPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVGFANSYPS 555
+ E G PP + G +++P PGG ++ T G ++ P G+G + S+
Sbjct: 403 GTVQTPEPGTSQPMPPSM-GTSTSHQPAT--PGGGTAQTPEAGTSQPMPPGMGTSTSHQP 459
Query: 556 ASEGDLTAQ 582
+ G TAQ
Sbjct: 460 TTPGGGTAQ 468
>AF301909-1|AAG33495.1| 845|Homo sapiens mu-protocadherin protein.
Length = 845
Score = 34.7 bits (76), Expect = 0.28
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 6/129 (4%)
Frame = +1
Query: 214 RPVMPKKKRGRP--PNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
RP G P N+ PG T + +P P + P G P PS
Sbjct: 511 RPPTSSTPGGSPGAENSTSHQPATPGGDTAQTPKPGTSQP-MPPGVGTSTSHQPAT-PSG 568
Query: 388 NEMLVQERGR----PPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVGFANSYPS 555
+ E G PP + G +++P PGG ++ T G ++ P G+G + S+
Sbjct: 569 GTVQTPEPGTSQPMPPSM-GTSTSHQPAT--PGGGTAQTPEAGTSQPMPPGMGTSTSHQP 625
Query: 556 ASEGDLTAQ 582
+ G TAQ
Sbjct: 626 TTPGGGTAQ 634
>AF258676-1|AAG16733.1| 845|Homo sapiens MUCDHL-FL protein.
Length = 845
Score = 34.7 bits (76), Expect = 0.28
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 6/129 (4%)
Frame = +1
Query: 214 RPVMPKKKRGRP--PNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
RP G P N+ PG T + +P P + P G P PS
Sbjct: 511 RPPTSSTPGGSPGAENSTSHQPATPGGDTAQTPKPGTSQP-MPPGVGTSTSHQPAT-PSG 568
Query: 388 NEMLVQERGR----PPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVGFANSYPS 555
+ E G PP + G +++P PGG ++ T G ++ P G+G + S+
Sbjct: 569 GTVQTPEPGTSQPMPPSM-GTSTSHQPAT--PGGGTAQTPEAGTSQPMPPGMGTSTSHQP 625
Query: 556 ASEGDLTAQ 582
+ G TAQ
Sbjct: 626 TTPGGGTAQ 634
>AY358368-1|AAQ88734.1| 839|Homo sapiens MUCDHL protein.
Length = 839
Score = 34.3 bits (75), Expect = 0.37
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Frame = +1
Query: 241 GRPP---NNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLVQER 411
G PP N+ PG T + +P P + P G P PS E
Sbjct: 513 GGPPGAENSTSHQPATPGGDTAQTPKPGTSQP-MPPGVGTSTSHQPAT-PSGGTAQTPEP 570
Query: 412 GR----PPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVGFANSYPSASEGDLTA 579
G PP + G +++P PGG ++ T G ++ P G+G + S+ + G TA
Sbjct: 571 GTSQPMPPSM-GTSTSHQPAT--PGGGTAQTPEAGTSQPMPPGMGTSTSHQPTTPGGGTA 627
Query: 580 Q 582
Q
Sbjct: 628 Q 628
>AF258674-2|AAG16731.1| 845|Homo sapiens MUCDHL-FL protein.
Length = 845
Score = 33.9 bits (74), Expect = 0.49
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
Frame = +1
Query: 214 RPVMPKKKRGRP--PNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSS 387
RP G P N+ PG T + +P P + P G P PS
Sbjct: 511 RPPTSSTPGGSPGAENSTSHQPATPGGDTAQTPKPGTSQP-MPPGVGTSTSHQPAT-PSG 568
Query: 388 NEMLVQERGR----PPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVGFANSYPS 555
E G PP + G +++P PGG ++ T G ++ P G+G + S+
Sbjct: 569 GTAQTPEPGTSQPMPPSM-GTSTSHQPAT--PGGGTAQTPEAGTSQPMPPGMGTSTSHQP 625
Query: 556 ASEGDLTAQ 582
+ G TAQ
Sbjct: 626 TTPGGGTAQ 634
>BT007396-1|AAP36060.1| 405|Homo sapiens erythrocyte membrane
protein band 4.9 (dematin) protein.
Length = 405
Score = 31.5 bits (68), Expect = 2.6
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Frame = +1
Query: 34 SAKGLTSKFVPKRDGPYRIVKKVS--PTTYHVAHVDKPDEVLGKYHVNDLTLYRENQSDA 207
S G S V K D K ++ P + +++PD ++ + H L +
Sbjct: 22 SVPGSPSSIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRS 81
Query: 208 LPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLS 336
R + PK P V DSR PG ++ A PR S
Sbjct: 82 RERSLSPKSTSPPPSPEVWADSRSPGIISQASAPRTTGTPRTS 124
>BC052805-1|AAH52805.1| 383|Homo sapiens EPB49 protein protein.
Length = 383
Score = 31.5 bits (68), Expect = 2.6
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Frame = +1
Query: 34 SAKGLTSKFVPKRDGPYRIVKKVS--PTTYHVAHVDKPDEVLGKYHVNDLTLYRENQSDA 207
S G S V K D K ++ P + +++PD ++ + H L +
Sbjct: 22 SVPGSPSSIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRS 81
Query: 208 LPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLS 336
R + PK P V DSR PG ++ A PR S
Sbjct: 82 RERSLSPKSTSPPPSPEVWADSRSPGIISQASAPRTTGTPRTS 124
>BC017445-1|AAH17445.1| 405|Homo sapiens EPB49 protein protein.
Length = 405
Score = 31.5 bits (68), Expect = 2.6
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Frame = +1
Query: 34 SAKGLTSKFVPKRDGPYRIVKKVS--PTTYHVAHVDKPDEVLGKYHVNDLTLYRENQSDA 207
S G S V K D K ++ P + +++PD ++ + H L +
Sbjct: 22 SVPGSPSSIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRS 81
Query: 208 LPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLS 336
R + PK P V DSR PG ++ A PR S
Sbjct: 82 RERSLSPKSTSPPPSPEVWADSRSPGIISQASAPRTTGTPRTS 124
>BC006318-1|AAH06318.1| 405|Homo sapiens EPB49 protein protein.
Length = 405
Score = 31.5 bits (68), Expect = 2.6
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Frame = +1
Query: 34 SAKGLTSKFVPKRDGPYRIVKKVS--PTTYHVAHVDKPDEVLGKYHVNDLTLYRENQSDA 207
S G S V K D K ++ P + +++PD ++ + H L +
Sbjct: 22 SVPGSPSSIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRS 81
Query: 208 LPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLS 336
R + PK P V DSR PG ++ A PR S
Sbjct: 82 RERSLSPKSTSPPPSPEVWADSRSPGIISQASAPRTTGTPRTS 124
>AF214519-1|AAF73987.1| 464|Homo sapiens AMP-activated protein
kinase gamma subunit protein.
Length = 464
Score = 31.5 bits (68), Expect = 2.6
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 406 ERGRPPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVG 534
E G PPG +GE +RP G ++F +T A+A P GVG
Sbjct: 42 EEGEPPG-QGEGPRSRPTAESTGLEATFPKTTPLAQADPAGVG 83
>M65030-1|AAA92977.1| 405|Homo sapiens
alpha(1,3)-fucosyltransferase protein.
Length = 405
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -1
Query: 457 PVGLLHTPPLVREDALAPGLASHYYWAEGQAQDQPYHQLRE 335
P GL PPL R+ L + SH W E QA+ + YHQL +
Sbjct: 218 PSGL--APPLSRKQGLVAWVVSH--WDERQARVRYYHQLSQ 254
>M58597-1|AAA63173.1| 530|Homo sapiens ELAM-1 ligand
fucosyltransferase protein.
Length = 530
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -1
Query: 457 PVGLLHTPPLVREDALAPGLASHYYWAEGQAQDQPYHQLRE 335
P GL PPL R+ L + SH W E QA+ + YHQL +
Sbjct: 343 PSGL--APPLSRKQGLVAWVVSH--WDERQARVRYYHQLSQ 379
>M58596-1|AAA63172.1| 405|Homo sapiens ELAM-1 ligand
fucosyltransferase protein.
Length = 405
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -1
Query: 457 PVGLLHTPPLVREDALAPGLASHYYWAEGQAQDQPYHQLRE 335
P GL PPL R+ L + SH W E QA+ + YHQL +
Sbjct: 218 PSGL--APPLSRKQGLVAWVVSH--WDERQARVRYYHQLSQ 254
>BC098277-1|AAH98277.1| 489|Homo sapiens protein kinase,
AMP-activated, gamma 3 non-catalytic subunit protein.
Length = 489
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 406 ERGRPPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVG 534
E G PPG +GE +RP G ++F +T A+A P GVG
Sbjct: 67 EEGEPPG-QGEGPRSRPAAESTGLEATFPKTTPLAQADPAGVG 108
>BC098102-1|AAH98102.1| 489|Homo sapiens protein kinase,
AMP-activated, gamma 3 non-catalytic subunit protein.
Length = 489
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 406 ERGRPPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVG 534
E G PPG +GE +RP G ++F +T A+A P GVG
Sbjct: 67 EEGEPPG-QGEGPRSRPAAESTGLEATFPKTTPLAQADPAGVG 108
>BC024290-1|AAH24290.1| 329|Homo sapiens
deoxynucleotidyltransferase, terminal, interacting
protein 1 protein.
Length = 329
Score = 31.1 bits (67), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 223 MPKKKRGRPPNNVKTDSRVPGHMT--TRHAEPC-AEAPRLSPA 342
+PKK++GRPP ++ + R M + EP E P+ PA
Sbjct: 163 LPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWDPA 205
>BC009535-1|AAH09535.1| 212|Homo sapiens DNTTIP1 protein protein.
Length = 212
Score = 31.1 bits (67), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 223 MPKKKRGRPPNNVKTDSRVPGHMT--TRHAEPC-AEAPRLSPA 342
+PKK++GRPP ++ + R M + EP E P+ PA
Sbjct: 46 LPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWDPA 88
>AL050348-11|CAI21036.1| 231|Homo sapiens
deoxynucleotidyltransferase, terminal, interacting
protein 1 protein.
Length = 231
Score = 31.1 bits (67), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 223 MPKKKRGRPPNNVKTDSRVPGHMT--TRHAEPC-AEAPRLSPA 342
+PKK++GRPP ++ + R M + EP E P+ PA
Sbjct: 89 LPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWDPA 131
>AL050348-9|CAI21034.1| 279|Homo sapiens
deoxynucleotidyltransferase, terminal, interacting
protein 1 protein.
Length = 279
Score = 31.1 bits (67), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 223 MPKKKRGRPPNNVKTDSRVPGHMT--TRHAEPC-AEAPRLSPA 342
+PKK++GRPP ++ + R M + EP E P+ PA
Sbjct: 113 LPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWDPA 155
>AL050348-7|CAC17441.1| 329|Homo sapiens
deoxynucleotidyltransferase, terminal, interacting
protein 1 protein.
Length = 329
Score = 31.1 bits (67), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 223 MPKKKRGRPPNNVKTDSRVPGHMT--TRHAEPC-AEAPRLSPA 342
+PKK++GRPP ++ + R M + EP E P+ PA
Sbjct: 163 LPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWDPA 205
>AJ249977-1|CAB65117.1| 492|Homo sapiens AMP-activated protein
kinase gamma 3 subunit protein.
Length = 492
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 406 ERGRPPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVG 534
E G PPG +GE +RP G ++F +T A+A P GVG
Sbjct: 67 EEGEPPG-QGEGPRSRPAAESTGLEATFPKTTPLAQADPAGVG 108
>AB035676-1|BAB62888.1| 329|Homo sapiens TdT binding protein
protein.
Length = 329
Score = 31.1 bits (67), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 223 MPKKKRGRPPNNVKTDSRVPGHMT--TRHAEPC-AEAPRLSPA 342
+PKK++GRPP ++ + R M + EP E P+ PA
Sbjct: 163 LPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWDPA 205
>U28389-1|AAC50223.1| 405|Homo sapiens dematin 52 kDa subunit
protein.
Length = 405
Score = 30.7 bits (66), Expect = 4.5
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 2/103 (1%)
Frame = +1
Query: 34 SAKGLTSKFVPKRDGPYRIVKKVS--PTTYHVAHVDKPDEVLGKYHVNDLTLYRENQSDA 207
S G S V K D K ++ P + +++PD ++ + H L
Sbjct: 22 SVPGSPSSIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRQ 81
Query: 208 LPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLS 336
R + PK P V DSR PG ++ A PR S
Sbjct: 82 RERSLSPKSTSPPPSPEVWADSRSPGIISQASAPRTTGTPRTS 124
>U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 chain
protein.
Length = 1685
Score = 30.7 bits (66), Expect = 4.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +1
Query: 241 GRPP-NNVKTDSRVPG-----HMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLV 402
GRP N +K D +PG M P + P P G G +P PS +++
Sbjct: 1312 GRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIII 1371
Query: 403 QERGRPPGLEGE 438
+ PPG+ G+
Sbjct: 1372 KGDAGPPGIPGQ 1383
>U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 chain
protein.
Length = 1691
Score = 30.7 bits (66), Expect = 4.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +1
Query: 241 GRPP-NNVKTDSRVPG-----HMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLV 402
GRP N +K D +PG M P + P P G G +P PS +++
Sbjct: 1318 GRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIII 1377
Query: 403 QERGRPPGLEGE 438
+ PPG+ G+
Sbjct: 1378 KGDAGPPGIPGQ 1389
>M63473-1|AAA51558.1| 762|Homo sapiens alpha-5 type IV collagen
protein.
Length = 762
Score = 30.7 bits (66), Expect = 4.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +1
Query: 241 GRPP-NNVKTDSRVPG-----HMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLV 402
GRP N +K D +PG M P + P P G G +P PS +++
Sbjct: 389 GRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIII 448
Query: 403 QERGRPPGLEGE 438
+ PPG+ G+
Sbjct: 449 KGDAGPPGIPGQ 460
>M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen
protein.
Length = 1604
Score = 30.7 bits (66), Expect = 4.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +1
Query: 241 GRPP-NNVKTDSRVPG-----HMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLV 402
GRP N +K D +PG M P + P P G G +P PS +++
Sbjct: 1231 GRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIII 1290
Query: 403 QERGRPPGLEGE 438
+ PPG+ G+
Sbjct: 1291 KGDAGPPGIPGQ 1302
>M31115-1|AAA52045.1| 772|Homo sapiens COL4A5 protein.
Length = 772
Score = 30.7 bits (66), Expect = 4.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +1
Query: 241 GRPP-NNVKTDSRVPG-----HMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLV 402
GRP N +K D +PG M P + P P G G +P PS +++
Sbjct: 399 GRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIII 458
Query: 403 QERGRPPGLEGE 438
+ PPG+ G+
Sbjct: 459 KGDAGPPGIPGQ 470
>L19713-1|AAA58438.1| 383|Homo sapiens dematin protein.
Length = 383
Score = 30.7 bits (66), Expect = 4.5
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 2/103 (1%)
Frame = +1
Query: 34 SAKGLTSKFVPKRDGPYRIVKKVS--PTTYHVAHVDKPDEVLGKYHVNDLTLYRENQSDA 207
S G S V K D K ++ P + +++PD ++ + H L
Sbjct: 22 SVPGSPSSIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRQ 81
Query: 208 LPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLS 336
R + PK P V DSR PG ++ A PR S
Sbjct: 82 RERSLSPKSTSPPPSPEVWADSRSPGIISQASAPRTTGTPRTS 124
>AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 30.7 bits (66), Expect = 4.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +1
Query: 241 GRPP-NNVKTDSRVPG-----HMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLV 402
GRP N +K D +PG M P + P P G G +P PS +++
Sbjct: 1312 GRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIII 1371
Query: 403 QERGRPPGLEGE 438
+ PPG+ G+
Sbjct: 1372 KGDAGPPGIPGQ 1383
>AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 30.7 bits (66), Expect = 4.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +1
Query: 241 GRPP-NNVKTDSRVPG-----HMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLV 402
GRP N +K D +PG M P + P P G G +P PS +++
Sbjct: 1312 GRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIII 1371
Query: 403 QERGRPPGLEGE 438
+ PPG+ G+
Sbjct: 1372 KGDAGPPGIPGQ 1383
>AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 30.7 bits (66), Expect = 4.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +1
Query: 241 GRPP-NNVKTDSRVPG-----HMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLV 402
GRP N +K D +PG M P + P P G G +P PS +++
Sbjct: 1312 GRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIII 1371
Query: 403 QERGRPPGLEGE 438
+ PPG+ G+
Sbjct: 1372 KGDAGPPGIPGQ 1383
>AK025012-1|BAB15052.1| 295|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21359 fis, clone COL02848. ).
Length = 295
Score = 30.7 bits (66), Expect = 4.5
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +1
Query: 358 GLAPVPQPSSNEMLVQERGRPPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVGF 537
G A P+P +++ + PP + G +++P PGG ++ T G ++ P G+G
Sbjct: 19 GTAQTPEPGTSQPM------PPSM-GTSTSHQPAT--PGGGTAQTPEAGTSQPMPPGMGT 69
Query: 538 ANSYPSASEGDLTAQ 582
+ S+ + G TAQ
Sbjct: 70 STSHQPTTPGGGTAQ 84
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,492,163
Number of Sequences: 237096
Number of extensions: 2335786
Number of successful extensions: 7655
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 6936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7638
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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