Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30l07
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 1.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 1.2
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 29 2.1
U53343-5|AAA96222.1| 556|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical ... 29 2.1
Z49125-7|CAN99660.1| 717|Caenorhabditis elegans Hypothetical pr... 29 2.8
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 28 4.9
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 28 4.9
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 28 4.9
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 28 4.9
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 28 4.9
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 28 4.9
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 28 4.9
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 28 6.4
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 27 8.5
U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p... 27 8.5
AL117203-10|CAB60424.2| 855|Caenorhabditis elegans Hypothetical... 27 8.5
AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical ... 27 8.5
AC024204-1|AAF36040.3| 414|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/90 (27%), Positives = 32/90 (35%)
Frame = +1
Query: 211 PRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSN 390
P P + PP T P + P P +P GM G+ P P PS
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS-- 323
Query: 391 EMLVQERGRPPGLEGEYVANRPDY*WPGGL 480
R PPG+ G P +PGG+
Sbjct: 324 ------RFGPPGMGGMPPPPPPGMRYPGGM 347
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/90 (27%), Positives = 32/90 (35%)
Frame = +1
Query: 211 PRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSN 390
P P + PP T P + P P +P GM G+ P P PS
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS-- 333
Query: 391 EMLVQERGRPPGLEGEYVANRPDY*WPGGL 480
R PPG+ G P +PGG+
Sbjct: 334 ------RFGPPGMGGMPPPPPPGMRYPGGM 357
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 247 PPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVP-QPSSNEMLVQERGRPP 423
PP K+ P H T EP ++ P + P G +VGL P+P SSN L +
Sbjct: 1973 PPPAQKSPQPAPFHSIT---EPLSDYP-VPPPLGSLVGLPPMPAYLSSNSSLPPQHHHVS 2028
Query: 424 GLEGEYVAN 450
L + +N
Sbjct: 2029 PLSNDSPSN 2037
>U53343-5|AAA96222.1| 556|Caenorhabditis elegans Hypothetical
protein F22F4.1 protein.
Length = 556
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 97 KVSPTTYHVAHVDKPDEVLGKYHVNDLTLYRENQSDALPRPVMPK 231
K + +YHV V D+ + H +D++ Y ++Q+DA+P +PK
Sbjct: 505 KYACKSYHV-FVRNTDD-FNRRHFDDVSEYMKSQADAMPLGALPK 547
>AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical
protein Y48C3A.8 protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/62 (24%), Positives = 24/62 (38%)
Frame = +1
Query: 250 PNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLVQERGRPPGL 429
P+++ P T + E + L+P GG G P P P++ + G P
Sbjct: 128 PSSIGQQLHQPKQEITTNGEEIMKTEALTPTGGGGGGSVPPPPPAATAAVSMNGGGPGSA 187
Query: 430 EG 435
G
Sbjct: 188 PG 189
>Z49125-7|CAN99660.1| 717|Caenorhabditis elegans Hypothetical
protein C47G2.5b protein.
Length = 717
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/82 (21%), Positives = 30/82 (36%)
Frame = +1
Query: 313 CAEAPRLSPAAGGMVGLAPVPQPSSNEMLVQERGRPPGLEGEYVANRPDY*WPGGLSSFT 492
C+E S AG +P+ P E ++ PP + + D W SSF
Sbjct: 595 CSERANSSSCAGISFETSPIKWPGEAEKTSEKASEPPSVVANMAPPKEDDMW-ADFSSFP 653
Query: 493 RTGGRAKAQPGGVGFANSYPSA 558
A A ++++P +
Sbjct: 654 TISPTAAANSASSSSSDAWPGS 675
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 28.3 bits (60), Expect = 4.9
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Frame = +1
Query: 250 PNNVKTDSRVPGHM--TTRHAEPCAE--APRLSPAAGGMVGLAPVPQPSSNE-MLVQERG 414
P + D R+P ++ TT P A A LS GG G P+ PS++ + +
Sbjct: 173 PEFQRPDDRLPYYVPVTTNGTLPNASSAATPLSGTPGG-AGPQPMTMPSTSSCQMTTPKW 231
Query: 415 RPPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVGFANS 546
PG V N P GG +S G R GG+ F +S
Sbjct: 232 ASPG-----VCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEFPSS 270
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 28.3 bits (60), Expect = 4.9
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Frame = +1
Query: 250 PNNVKTDSRVPGHM--TTRHAEPCAE--APRLSPAAGGMVGLAPVPQPSSNE-MLVQERG 414
P + D R+P ++ TT P A A LS GG G P+ PS++ + +
Sbjct: 248 PEFQRPDDRLPYYVPVTTNGTLPNASSAATPLSGTPGG-AGPQPMTMPSTSSCQMTTPKW 306
Query: 415 RPPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVGFANS 546
PG V N P GG +S G R GG+ F +S
Sbjct: 307 ASPG-----VCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEFPSS 345
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 28.3 bits (60), Expect = 4.9
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Frame = +1
Query: 250 PNNVKTDSRVPGHM--TTRHAEPCAE--APRLSPAAGGMVGLAPVPQPSSNE-MLVQERG 414
P + D R+P ++ TT P A A LS GG G P+ PS++ + +
Sbjct: 182 PEFQRPDDRLPYYVPVTTNGTLPNASSAATPLSGTPGG-AGPQPMTMPSTSSCQMTTPKW 240
Query: 415 RPPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVGFANS 546
PG V N P GG +S G R GG+ F +S
Sbjct: 241 ASPG-----VCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEFPSS 279
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 28.3 bits (60), Expect = 4.9
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Frame = +1
Query: 250 PNNVKTDSRVPGHM--TTRHAEPCAE--APRLSPAAGGMVGLAPVPQPSSNE-MLVQERG 414
P + D R+P ++ TT P A A LS GG G P+ PS++ + +
Sbjct: 326 PEFQRPDDRLPYYVPVTTNGTLPNASSAATPLSGTPGG-AGPQPMTMPSTSSCQMTTPKW 384
Query: 415 RPPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVGFANS 546
PG V N P GG +S G R GG+ F +S
Sbjct: 385 ASPG-----VCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEFPSS 423
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 28.3 bits (60), Expect = 4.9
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Frame = +1
Query: 250 PNNVKTDSRVPGHM--TTRHAEPCAE--APRLSPAAGGMVGLAPVPQPSSNE-MLVQERG 414
P + D R+P ++ TT P A A LS GG G P+ PS++ + +
Sbjct: 173 PEFQRPDDRLPYYVPVTTNGTLPNASSAATPLSGTPGG-AGPQPMTMPSTSSCQMTTPKW 231
Query: 415 RPPGLEGEYVANRPDY*WPGGLSSFTRTGGRAKAQPGGVGFANS 546
PG V N P GG +S G R GG+ F +S
Sbjct: 232 ASPG-----VCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEFPSS 270
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 127 HVDKPDEVLGKYHVNDLTLYRENQSDALPRPVMPKKKRGRPPNN 258
H+D+ DE G+Y + ++Y ++ D L + KK P +
Sbjct: 1166 HLDESDEEKGEYRLPTTSMYAFDRDDDLQASIKESKKPAPEPKS 1209
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 127 HVDKPDEVLGKYHVNDLTLYRENQSDALPRPVMPKKKRGRPPNN 258
H+D+ DE G+Y + ++Y ++ D L + KK P +
Sbjct: 1125 HLDESDEEKGEYRLPTTSMYAFDRDDDLQASIKESKKPAPEPKS 1168
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 247 PPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVP-QPSSNEMLVQERGRPP 423
PP K+ P H T + P + P G +VGL P+P SSN L +
Sbjct: 1973 PPPAQKSPQPAPFHSITEPLSVIIDYP-VPPPLGSLVGLPPMPAYLSSNSSLPPQHHHVS 2031
Query: 424 GLEGEYVAN 450
L + +N
Sbjct: 2032 PLSNDSPSN 2040
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 27.5 bits (58), Expect = 8.5
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Frame = +1
Query: 136 KPDEVLGKYHVNDLTLYRENQSDALPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPC 315
K E + KY N++ E R P R PP + + P R P
Sbjct: 526 KLSEAMEKYQCNNVWTRTEAPETVTTRTEPP---RTEPPRTIPPRTEAPRTEPPRTEPPK 582
Query: 316 AEAPR-LSPAAGGMVGLAPVPQPSSNE 393
EAPR + P + + P +P E
Sbjct: 583 TEAPRTVRPKTEAPMTVPPRTEPPMTE 609
>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
protein F27C1.11 protein.
Length = 1037
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 253 NNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLVQERGRPPGLE 432
N T ++P + R+A EA +S G P +S+ +++R P +
Sbjct: 134 NENSTKEKLPQILPKRYAP--REAYSISEKKSSTGGSDPATSGNSSGNSIEKRQPLPSIN 191
Query: 433 GEYVANRPDY*WPGGLSSFTRT 498
YV+ RP G+S+ T T
Sbjct: 192 NRYVSRRPQ---ENGVSNSTTT 210
>AL117203-10|CAB60424.2| 855|Caenorhabditis elegans Hypothetical
protein Y48C3A.14 protein.
Length = 855
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -2
Query: 603 SFAKQLLLSC*VSFGGARVAVSKSHPSWLSLCSPTCPGETGKASG 469
S + + C GG + ++SHP W C+ CP G G
Sbjct: 710 SISSNGVCGCLQDCGGVMLLDTQSHPKWRMTCN-KCPSVVGLFEG 753
>AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical
protein C08G5.5 protein.
Length = 99
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 271 SRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLVQERGRPPGLEGEYV 444
S +P ++ ++ P A+AP P + G P+P+PSS +PP + +
Sbjct: 45 SGLPPMVSESYSAPYAQAP---PTSTGYPSAPPMPRPSSPPPAYSAIYKPPNMTSSQI 99
>AC024204-1|AAF36040.3| 414|Caenorhabditis elegans Hypothetical
protein Y73B6A.1 protein.
Length = 414
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 205 ALPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAE 309
A P PV+PK +GR ++K ++R H AE
Sbjct: 102 AAPTPVVPKTTKGRNDVHLKNNARRQVHREGERAE 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,181,069
Number of Sequences: 27780
Number of extensions: 321192
Number of successful extensions: 1159
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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