Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30l02
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    29   0.45 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    28   1.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   5.6  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.7  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    25   9.7  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   9.7  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   9.7  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +2

Query: 371 EGVVMELADCALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIF 547
           EG  M+L   A PL           +  KD  A  +     +K G  R DLL AN+ IF
Sbjct: 59  EGEAMDLNHAA-PLSHETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIF 116


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 504 PSFLGIAPTRKAAA--TSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAISRRWR 331
           P F  + P RK +A  T+L  SS       P  + RA SANS+T+P   P   A S + R
Sbjct: 516 PQFSAV-PHRKVSAQDTNLMGSSPGMYNHMPYLN-RATSANSITSPGVLPEGMAASLKKR 573

Query: 330 KT 325
            T
Sbjct: 574 TT 575


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 465 ATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPI 358
           +T   ++SG     T   SG    + S+TTP+STP+
Sbjct: 574 STITSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPL 609


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 411 SGRAQSANSMTTPSSTPIIGAISRRWRKTGC*GPKTAPDAI 289
           + R+ S N   TPSS+P   + SR +       PK + D I
Sbjct: 147 TNRSSSDNGFLTPSSSPRSPSCSRVFNAVQLCSPKKSKDDI 187


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 241 CCNWCCRTNCILTSLSNCVWSSFWTSTTCLP 333
           CC  CC  + I    SN ++     ST  +P
Sbjct: 216 CCILCCLGSAIFAKASNALFVVIILSTISIP 246


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 36  TYVVHTYILM---FYLCIKQSRNSTEFYFFKAC 125
           TY ++  I M   + + IK +RN  E +FFK C
Sbjct: 39  TYFINYEIEMGQTYPIDIKMTRNEAEDFFFKFC 71


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 235 KSCCNWCCRTNCILTSLSNCVW 300
           KS  +W C +   ++S+SN VW
Sbjct: 447 KSSKSWRCMSQTHVSSISNLVW 468


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 417 AKSGRAQSANSMTTPSSTPI 358
           A++   QSA  +TTPSS PI
Sbjct: 322 AQNSLGQSAVDLTTPSSPPI 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,822
Number of Sequences: 5004
Number of extensions: 38613
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)