Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30l02
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 121 3e-28
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 119 1e-27
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 94 8e-20
08_01_0882 - 8663006-8663068,8663260-8663328,8663410-8663515,866... 29 1.8
09_01_0051 - 862286-864670 29 3.2
08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965 28 4.3
07_01_1212 + 11560247-11560684,11560773-11560826,11560926-115609... 28 4.3
11_01_0772 - 6455042-6458107 28 5.6
06_02_0243 - 13433276-13434154,13434192-13434593,13434730-13434750 28 5.6
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 28 5.6
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425... 27 7.5
06_01_0132 - 1024099-1024824 27 7.5
09_04_0168 - 15295442-15295477,15295478-15295552,15295660-152957... 27 9.9
08_02_1319 + 26117353-26117784 27 9.9
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 27 9.9
01_01_0101 - 766382-767487,767599-767756,767900-768615 27 9.9
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 121 bits (292), Expect = 3e-28
Identities = 57/107 (53%), Positives = 76/107 (71%)
Frame = +2
Query: 227 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 406
+P++V+VTGAAGQI Y+++ IA G + G QPV LHLLD+ L GV MEL D AL
Sbjct: 40 KPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAAL 99
Query: 407 PLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIF 547
PLL GV+ T++ EAFK V A ++G PR++GMERKDL++ NV I+
Sbjct: 100 PLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIY 146
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 119 bits (287), Expect = 1e-27
Identities = 58/107 (54%), Positives = 73/107 (68%)
Frame = +2
Query: 227 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 406
EP+RV+VTGAAGQI Y+L+ IA G + G QPV LH+LDI P L G+ MEL D A
Sbjct: 4 EPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVDAAF 63
Query: 407 PLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIF 547
PLL G++ T + EA V A +VG PRKEGMERKD+++ NV I+
Sbjct: 64 PLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIY 110
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 93.9 bits (223), Expect = 8e-20
Identities = 51/105 (48%), Positives = 63/105 (60%)
Frame = +2
Query: 233 IRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPL 412
+ V V+GAAG I+ LL+++ASG VFGP QP+ L LL + LEGV MEL D PL
Sbjct: 74 VNVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLYPL 133
Query: 413 LAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIF 547
L V +P F+D A L+GA PR GMER LL N +IF
Sbjct: 134 LREVSIGIDPYVVFEDAEWALLIGAKPRGPGMERSALLDINGQIF 178
>08_01_0882 -
8663006-8663068,8663260-8663328,8663410-8663515,
8663889-8663944,8664163-8664222,8664310-8664529,
8664561-8664655,8664757-8664882,8664954-8665008,
8666163-8666290
Length = 325
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 209 GNIKMAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLE 373
G ++ E +R+ + Q Q+A GA FGP+ P L +DIA + + +
Sbjct: 187 GEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYD 241
>09_01_0051 - 862286-864670
Length = 794
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 543 MRTLAARRSFLSIPSFLGIAPTRKAAATSLKA 448
MR AA RSFL +PS I T A++ SL A
Sbjct: 1 MRCAAAARSFLPLPSTTRIHTTATASSPSLAA 32
>08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965
Length = 357
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = -3
Query: 489 IAPTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTP---SSTPIIGA--ISRRWRKT 325
+A AAAT + +G +V TP G + + TTP S P+I + + R
Sbjct: 225 LAAAAAAAATCSSSPAGSSVPITPTAVGHSGGGQTQTTPCAFSEAPVITSDDVEANLRLL 284
Query: 324 GC 319
GC
Sbjct: 285 GC 286
>07_01_1212 +
11560247-11560684,11560773-11560826,11560926-11560985,
11561084-11561227
Length = 231
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = -3
Query: 510 SIPSFLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAIS 343
S P+F G T A T + A TP+ G +A + TPSSTP GA S
Sbjct: 25 STPAF-GTPSTNPAFGTPSSTPAFGAPSSTPS-FGTPSTAPAFGTPSSTPAFGAPS 78
>11_01_0772 - 6455042-6458107
Length = 1021
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -2
Query: 415 QKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK*VCNLSGSTSYNNS 236
+K ST+ ++ + HR ++ V D L R CS +++++ ++S + + +
Sbjct: 564 KKGDSTLEEVAEGYLMELVHRNMLQLVYNDELGRVSTCSMHDILRELALSISKAELFGTA 623
Query: 235 YRFS 224
FS
Sbjct: 624 NNFS 627
>06_02_0243 - 13433276-13434154,13434192-13434593,13434730-13434750
Length = 433
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 486 APTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAISRRWRK 328
A R++A K SSG + PA+S R+ A ++ P+ GA S + K
Sbjct: 55 AAFRESAGDPRKLSSGMSSRLLPARSMRSTGAGDDGEVAAAPVAGARSLSFSK 107
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 446 EAFKDVAAAFLVGAMPRKEGMERKDLLA 529
EA+K + VGAM R G RK LLA
Sbjct: 146 EAYKAIDKTVKVGAMHRNTGNHRKSLLA 173
>06_03_0791 -
24641350-24641418,24641684-24641965,24642318-24642537,
24642657-24642776,24643056-24643132,24643220-24643339,
24644121-24644186,24644265-24644479,24645450-24645582,
24646562-24646708,24647301-24647596,24648222-24648319,
24648425-24648471,24649340-24649449,24649663-24649735,
24650795-24650899
Length = 725
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 388 LHDNTFKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK 278
LH+N +H KK+ E R L + +C R NL+++
Sbjct: 46 LHNNQPYAAYHILKGKKLPESRYLFAMSCFRMNLLRE 82
>06_01_0132 - 1024099-1024824
Length = 241
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 209 GNIKMAEPIRVVVTGAAGQIAYSLLYQIASG-AVFGPQQPVFL---HLLDIA 352
GN+ A +R TG GQI Y+ + + +G + P P + LLD+A
Sbjct: 76 GNLTFAFTVRAANTGGFGQIYYTNIKALLAGRSASSPASPTYFVKTGLLDMA 127
>09_04_0168 -
15295442-15295477,15295478-15295552,15295660-15295722,
15296095-15296319,15296421-15296562,15296678-15296839,
15298148-15298320,15300352-15300882
Length = 468
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 519 SFLSIPS-FLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAIS 343
+FLS+PS L +P AA +S+ F V R PA++ + S ST +
Sbjct: 20 AFLSLPSPLLPASPPLPAAPAP--SSNAFCVPRGPARAVAVSVSVSAYGAGSTAAASRLH 77
Query: 342 RRW 334
R W
Sbjct: 78 RMW 80
>08_02_1319 + 26117353-26117784
Length = 143
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Frame = -3
Query: 456 LKASSGFAVGRT-PAKSGRAQSANSMTT----PSSTPIIG--AISRRW 334
LKA S RT PAKSGR A+S T SSTP + SR+W
Sbjct: 96 LKAKSDSVRPRTCPAKSGRPPGASSSRTVLGCSSSTPTAARWSTSRQW 143
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 471 AAATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPII 355
A + +++SSG A G + + SGR Q+ S+ + T ++
Sbjct: 182 APKSKMQSSSGSADGSSGSSSGRGQTLGSLNIKNDTELM 220
>01_01_0101 - 766382-767487,767599-767756,767900-768615
Length = 659
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 66 FYLCIKQSRNSTEFYFFKACVSSSFSFI 149
F C ++ RNS+ Y AC+S+S SF+
Sbjct: 137 FVNCSQEIRNSSWMYMPVACLSTSRSFV 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,922
Number of Sequences: 37544
Number of extensions: 254599
Number of successful extensions: 853
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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