Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30k24
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 71 5e-13
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 30 1.1
06_02_0265 - 13586552-13587985 29 3.3
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 29 3.3
06_01_0422 + 3034556-3034777,3034859-3035138,3036398-3036483,303... 28 4.4
05_03_0408 + 13601576-13601748,13601795-13602104,13602597-136028... 28 4.4
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 28 4.4
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473... 28 5.8
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 71.3 bits (167), Expect = 5e-13
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 5/88 (5%)
Frame = -2
Query: 252 VVEALIHINNKLQQKEAAEGLLERVMAQREAGDTNLKVQIR--WYEKLHNWEKALNLY-- 85
VVE+LIHINN+L Q EAA G+L +Q+ +L+VQ++ WYEKLH W++AL Y
Sbjct: 1293 VVESLIHINNQLHQHEAAIGIL--TYSQQ-----HLEVQLKESWYEKLHRWDEALKAYKA 1345
Query: 84 -SEKLSADPDDVDAYLGELRCYEALGEW 4
S + S ++DA LG +RC AL W
Sbjct: 1346 KSSQASGPLQNLDATLGRMRCLAALARW 1373
>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 153 TNLKVQIRWYEKLHNWEKALNLYSEKLSADPDDVDAYLGELRC 25
+ L+ Q+ EK NW + L L + L +PD V + L C
Sbjct: 1660 STLQDQLIINEKAGNWAEVLTLCEQSLQMEPDSVHRHCDVLNC 1702
>06_02_0265 - 13586552-13587985
Length = 477
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = -2
Query: 291 IQEEEFRNGATSQ--VVEALIHINNKLQQKEAAEGLLERVMAQREA 160
I+ ++ GA Q +V+A++ ++ + +A +G+LERVMA +E+
Sbjct: 398 IEVRGYKPGALVQADIVDAILR---RIMESDAQQGVLERVMAMKES 440
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = -2
Query: 222 KLQQKEAAEGLLERVMAQREAGDTNLKVQIRWYEKLHNWEKALNLYSEKLSADPDDVDAY 43
K QQ++ EG+ V D +V+ + E+ + + +Y E LS DP DVDA
Sbjct: 128 KQQQQQEEEGVEAEVEEAWLRQDEEEEVEEKEEEE-EEADDEVQMYMEILSRDPGDVDAL 186
Query: 42 LGELRCYEALGEW 4
L EW
Sbjct: 187 KCALFAKMRRAEW 199
>06_01_0422 +
3034556-3034777,3034859-3035138,3036398-3036483,
3036614-3036837,3036911-3036971,3037634-3037828,
3037981-3038205
Length = 430
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 117 LHNWEKALNLYSEKLSADPDDVDAYLGELRCYEAL 13
+HN+E A+ Y + L P Y G RC E +
Sbjct: 242 MHNYEDAMTTYLDGLKYGPQKTTIYDGIKRCLEQI 276
>05_03_0408 +
13601576-13601748,13601795-13602104,13602597-13602834,
13603014-13603364,13603457-13603542,13603685-13603759,
13604241-13604542,13605359-13605622,13606032-13606806
Length = 857
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 314 TILPIIFVSRKKSSAMAPLHKL 249
T+ P I +R++ SAM P+HKL
Sbjct: 518 TVEPFIIATRRQLSAMHPIHKL 539
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 120 KLHNWEKALNLYSEKLSADPDDVDAYLGELRCYEALG 10
K + +A+ YSE L +P D Y CY LG
Sbjct: 575 KQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLG 611
>02_03_0272 -
17146578-17146691,17146806-17146926,17147260-17147365,
17147469-17147551,17147688-17147815,17147897-17147983,
17148064-17148174,17148502-17148669,17148753-17148837,
17148921-17149037,17149127-17149203,17149299-17149370,
17150538-17150634,17150750-17150952,17151115-17151217,
17151324-17151391,17151461-17151514,17151595-17151704,
17151982-17152060,17152171-17152233,17153410-17153529,
17153913-17153969,17154071-17154187,17156426-17156476,
17156591-17156689,17156787-17156935,17158090-17158312
Length = 953
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 105 EKALNLYSEKLSADPDDVDAYLGELRCYEALG 10
+KAL Y E + P DAYL + Y+ +G
Sbjct: 265 DKALLYYKEAVKLKPSFADAYLNQGNVYKTMG 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,030,336
Number of Sequences: 37544
Number of extensions: 194460
Number of successful extensions: 477
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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