Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30k24
(559 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 48 5e-06
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 48 5e-06
Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical pr... 32 0.32
Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical pr... 32 0.32
U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc... 30 1.3
U21320-2|ABC71824.1| 973|Caenorhabditis elegans O-linked glcnac... 30 1.3
U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac... 30 1.3
Z35639-6|CAA84698.2| 322|Caenorhabditis elegans Hypothetical pr... 29 2.3
U64856-4|AAB04988.2| 506|Caenorhabditis elegans Bbs (bardet-bie... 28 4.0
U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 28 5.2
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 28 5.2
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 48.0 bits (109), Expect = 5e-06
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 21/102 (20%)
Frame = -2
Query: 246 EALIHINNKLQQKEAAEGLLERVMAQREAGDTNLKVQIRWYEKLHNWEKALNLY---SEK 76
++LI NKL +E A G V+ E + N +++ RWYEKL+ WEKAL Y +K
Sbjct: 1485 QSLITYANKLNVQEEAAG----VVRYAERNEMNFQMRGRWYEKLNEWEKALGAYELEEKK 1540
Query: 75 LSADP-----DDVD-------------AYLGELRCYEALGEW 4
S+ P D+ D A + E+RC EALG W
Sbjct: 1541 KSSCPNLQVYDEKDHLMTPEEAATAEEARMHEMRCLEALGRW 1582
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 48.0 bits (109), Expect = 5e-06
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 21/102 (20%)
Frame = -2
Query: 246 EALIHINNKLQQKEAAEGLLERVMAQREAGDTNLKVQIRWYEKLHNWEKALNLY---SEK 76
++LI NKL +E A G V+ E + N +++ RWYEKL+ WEKAL Y +K
Sbjct: 1485 QSLITYANKLNVQEEAAG----VVRYAERNEMNFQMRGRWYEKLNEWEKALGAYELEEKK 1540
Query: 75 LSADP-----DDVD-------------AYLGELRCYEALGEW 4
S+ P D+ D A + E+RC EALG W
Sbjct: 1541 KSSCPNLQVYDEKDHLMTPEEAATAEEARMHEMRCLEALGRW 1582
>Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical
protein F01G10.5 protein.
Length = 824
Score = 33.5 bits (73), Expect = 0.11
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = -2
Query: 291 IQEEEFRNGATSQVVEALIHINNKLQQKEAAEGLLERVMAQR-EAGDTNLKVQIRWYEKL 115
I E+E RN + Q E + N+L QK+A L+R + Q ++ LK Q
Sbjct: 547 ITEQEIRNQTSVQYKERTSALENQLSQKDAEIENLKRDLQQLVTKHESELKEQHEQLNVH 606
Query: 114 HNWEKALNLYSEKLSADPDDV---DAYLGELRC 25
H ++ L+ +EKL + + + + +LGE RC
Sbjct: 607 HQSQQKLHSEAEKLRREHEALGKKNCFLGE-RC 638
>Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 31.9 bits (69), Expect = 0.32
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 114 HNWEKALNLYSEKLSADPDDVDAYLGELRCYEALGE 7
H +E+A+ L+ ++ P AY G+ R Y+ GE
Sbjct: 465 HQYEEAMELFDHVIAVYPASTRAYFGKARAYDIRGE 500
>Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 31.9 bits (69), Expect = 0.32
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 114 HNWEKALNLYSEKLSADPDDVDAYLGELRCYEALGE 7
H +E+A+ L+ ++ P AY G+ R Y+ GE
Sbjct: 465 HQYEEAMELFDHVIAVYPASTRAYFGKARAYDIRGE 500
>U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc
transferase protein.
Length = 1151
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 111 NWEKALNLYSEKLSADPDDVDAYLGELRCYEALGEW 4
N +A+ YS L PD DAY C++ + +W
Sbjct: 548 NMAEAIQSYSTALKLKPDFPDAYCNLAHCHQIICDW 583
>U21320-2|ABC71824.1| 973|Caenorhabditis elegans O-linked glcnac
transferase protein1, isoform b protein.
Length = 973
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 111 NWEKALNLYSEKLSADPDDVDAYLGELRCYEALGEW 4
N +A+ YS L PD DAY C++ + +W
Sbjct: 370 NMAEAIQSYSTALKLKPDFPDAYCNLAHCHQIICDW 405
>U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac
transferase protein1, isoform a protein.
Length = 1151
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 111 NWEKALNLYSEKLSADPDDVDAYLGELRCYEALGEW 4
N +A+ YS L PD DAY C++ + +W
Sbjct: 548 NMAEAIQSYSTALKLKPDFPDAYCNLAHCHQIICDW 583
>Z35639-6|CAA84698.2| 322|Caenorhabditis elegans Hypothetical
protein D2045.7 protein.
Length = 322
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 135 IRWYEKLHNWEKALNLYSEKLSADPDDVDAYLGELR 28
I+W E H EK++NL L DP+ +GELR
Sbjct: 254 IKWNENRHISEKSINLIKSILIVDPNQRPT-IGELR 288
>U64856-4|AAB04988.2| 506|Caenorhabditis elegans Bbs (bardet-biedl
syndrome) proteinprotein 8 protein.
Length = 506
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 126 YEKLHNWEKALNLYSEKLSADPDDVDAYLGELRCYEALGEW 4
Y ++ AL YS L P++V G R EALGE+
Sbjct: 260 YNRVDQPMAALKTYSAGLEVFPENVTMLTGMARVQEALGEY 300
>U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical
protein M02F4.7 protein.
Length = 322
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 101 FSQLCNFSYHLICTFRFVSPASR*AITLSNRPSAASFCCNLLLM*IKASTTCEVAP 268
++Q C S+ ++C F V P + +T + +PS C L + + E P
Sbjct: 133 YAQPCPDSHSVLCEFDLVPPTPKPVLTTTVKPSGFPSCVQKYLNFVPCQSGWEYYP 188
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein
K04B12.1 protein.
Length = 1764
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 120 KLHNWEKALNL--YSEKLSADPDDVDAYLGELRCYEAL 13
+ H E++L L ++ L+A+P+D ++G RCY L
Sbjct: 1023 RYHQGEQSLILEGHNLNLAAEPNDFKIFIGNERCYVTL 1060
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 120 KLHNWEKALNL--YSEKLSADPDDVDAYLGELRCYEAL 13
+ H E++L L ++ L+A+P+D ++G RCY L
Sbjct: 1025 RYHQGEQSLILEGHNLNLAAEPNDFKIFIGNERCYVTL 1062
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,045,842
Number of Sequences: 27780
Number of extensions: 191135
Number of successful extensions: 572
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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