Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30k24
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.7  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   4.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.4  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 99  LFPNCAIFHTI*FALSDSCP 158
           +FPN ++ ++I  +L+ SCP
Sbjct: 142 IFPNGSVLYSIRISLTLSCP 161


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 99  LFPNCAIFHTI*FALSDSCP 158
           +FPN ++ ++I  +L+ SCP
Sbjct: 142 IFPNGSVLYSIRISLTLSCP 161


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 307 YLSFLYPGRRVPQWR 263
           +L  LYPG R P +R
Sbjct: 107 HLGTLYPGMRAPSFR 121


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 138 QIRWYEKLHNWEKALNLYSEKLSADP 61
           Q   Y+ L +W   ++ +S + ++DP
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDP 286


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 307 YLSFLYPGRRVPQWR 263
           +L  LYPG R P +R
Sbjct: 107 HLGTLYPGMRAPSFR 121


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 144 KVQIRWYEKLHNWEKAL 94
           K + R YEKLHN +K L
Sbjct: 246 KKKDRRYEKLHNEKKKL 262


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 153 TNLKVQIRWYEKLHNWE 103
           TNL V+  WY+    WE
Sbjct: 77  TNLWVEQSWYDYKLRWE 93


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 153 TNLKVQIRWYEKLHNWE 103
           TNL V+  WY+    WE
Sbjct: 77  TNLWVEQSWYDYKLRWE 93


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 303 YHFCIQEEEFRNGATSQVVEALI 235
           +HF    EEF +    + V+A+I
Sbjct: 295 FHFAHPREEFNHWTVMRCVQAMI 317


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 327 NILNHNFTYHFCIQEEEFRNGATSQVVE 244
           N + HN + H C    E   GA   V E
Sbjct: 550 NAVRHNLSLHKCFMRVENVKGAVWTVDE 577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,680
Number of Sequences: 438
Number of extensions: 2431
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)