Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30k23
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 49 4e-07
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 48 1e-06
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 30 0.21
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 1.5
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 27 1.9
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 27 1.9
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 26 3.4
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 26 3.4
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 7.9
>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 100
Score = 48.8 bits (111), Expect = 4e-07
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +1
Query: 154 VVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK 306
++ E G+ L WLN IE+ D R IG FLCTDR+ IL +EY K
Sbjct: 43 LIMENGEILLTSWLNRSVHIEIFDERKFIGKFLCTDREGAAILSNTTEYNK 93
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 47.6 bits (108), Expect = 1e-06
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +1
Query: 169 GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEY---LKNN---EGETEE 330
G K+ LN + DGR +G L D N++L C EY K N EE
Sbjct: 2 GTTKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEE 61
Query: 331 PRVLGLVMVPGRHIVSIQIDDTTP 402
R+LGLV++ G IVS+ + P
Sbjct: 62 KRMLGLVILRGEFIVSLSVQGPPP 85
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 29.9 bits (64), Expect = 0.21
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +1
Query: 139 SEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSE--YLKNN 312
++A Q++ L +++ K + + DG+ LIG+ D+ AN++L E Y+ +
Sbjct: 2 NQATQIIPFTTSGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDM 61
Query: 313 EGETEEPRVLGLVMVPGRHIV 375
G+ + G+ +V G ++V
Sbjct: 62 YGDIDR----GVYIVRGENVV 78
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.1 bits (57), Expect = 1.5
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 323 VSPSLFFKYSEQAPKITFASLSVHRNTPIRTL-PSVISI 210
+ SLF K+S Q I + ++ + TP+ TL P ++ +
Sbjct: 1489 IDTSLFAKFSSQFQNIIAKNFNMDKKTPVPTLSPEILEL 1527
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 247 FLCTDRDANVILGACSEYLKNNEGETEEPRVLGLV 351
++C RDA+ ++ SEY KN GE+ P ++ LV
Sbjct: 483 YVCDSRDADCVVKIWSEYTKNT-GES-SPVLVALV 515
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 362 PGTMTRPNTLGSSVSPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVIS 213
P T+ P+T + S+ Y+ P++ +S S+ N + LPS +S
Sbjct: 202 PSTVHAPSTRQRDLKSSILSLYASPRPQV--SSSSITTNATYQNLPSPVS 249
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 335 LGSSVSPSLFFKYSEQAPKITFASLSVHRN 246
LG+ +P +FF ++ F +LS+H+N
Sbjct: 706 LGACTTPDVFFAGIKEESLPAFENLSIHKN 735
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 67 NSFIVQGKRFEQAKEMSNEGNKT 135
+ I QG+ F+ +++N+GNKT
Sbjct: 239 HEIICQGREFQVQHKLTNKGNKT 261
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 7.9
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -1
Query: 365 LPGTMTRPNTLGSSVSPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVISILNFIFNHF 186
LP T +S S ++ YS +IT ++ SV+ T I++ +
Sbjct: 154 LPTNPTTTAIYSTSGSSNITTPYSN---RITNSNTSVNDITSKYLSVGTITLTTISGSDL 210
Query: 185 LSFAFPSSSTT*GASEVVL 129
+ FP++ TT G EVV+
Sbjct: 211 YTSTFPANGTTSGTVEVVI 229
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 162 LHHLRCFRSRFIAFITHFLSL 100
LH+L + ++ F+THF SL
Sbjct: 868 LHYLNQYIKSYLLFVTHFPSL 888
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,260
Number of Sequences: 5004
Number of extensions: 33172
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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