Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30k23
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0479 + 3606663-3607448 62 3e-10
06_03_1120 - 27765613-27765963 42 3e-04
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 32 0.21
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 1.5
09_06_0230 + 21717225-21717301,21717888-21717972,21718045-217181... 29 1.9
03_02_1004 + 13133261-13133971,13134052-13134915 29 2.6
01_05_0162 + 18759647-18759663,18760128-18760131,18760270-187606... 28 3.4
03_05_0207 - 21985340-21985570,21986430-21986636,21999578-219996... 27 5.9
>07_01_0479 + 3606663-3607448
Length = 261
Score = 61.7 bits (143), Expect = 3e-10
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Frame = +1
Query: 175 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-------NNEGETEEP 333
+K+ +++N + R+ + DGR L+G F+ DR N++LG C E+ K GE EE
Sbjct: 7 SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTTGEREER 66
Query: 334 RVLGLVMVPGRHIVSIQIDDTTP 402
R LGL+++ G +VS+ ++ P
Sbjct: 67 RTLGLLLLRGEEVVSMTVEGPPP 89
>06_03_1120 - 27765613-27765963
Length = 116
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +1
Query: 178 KLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYL--------KNNEGETEEP 333
KLRK L + + + DGR +G+F C D+ N++L EY + E
Sbjct: 24 KLRKMLFRRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEYRTSARRRSPSSPSSSPAEQ 83
Query: 334 RVLGLVMVPGRHIVSIQID 390
R LGL+++P S +D
Sbjct: 84 RGLGLILIPAACRSSCHVD 102
>04_04_0859 +
28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 32.3 bits (70), Expect = 0.21
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 377 DTMCLPGTMTRPNTLGSSVSPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVIS 213
D + GT + GS + PS+ FK +P++T + +HRNT + S+I+
Sbjct: 155 DGTTIQGTCKYCSKDGSKLYPSIIFKMLT-SPRVTLSRSKLHRNTSVMDKMSIIA 208
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +1
Query: 100 QAKEMSNEGNKTTSEAPQVVEEEGK---AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDA 270
Q K + +EG+++ P+ + + K +KL K L + I+ ++ V + D +
Sbjct: 1129 QQKSVQSEGSESLMSTPKNLHAQMKQELSKLIKVLQLPNTIQFNGAKIAGQVLIEVD-NV 1187
Query: 271 NVILGACSEYLKNNEGETEEPRVL 342
+++ EYL NN +EP+ +
Sbjct: 1188 TLLVEQFFEYLLNNHVVVQEPKYI 1211
>09_06_0230 +
21717225-21717301,21717888-21717972,21718045-21718165,
21718244-21718368,21718940-21718984,21719082-21719345,
21720067-21720111,21720182-21720212,21721644-21721693,
21722433-21724310,21724406-21724564,21724821-21724939,
21726917-21727059,21727670-21727735,21728184-21728317,
21728454-21728591,21728927-21729186,21729295-21729406,
21730727-21730909
Length = 1344
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 332 GSSVSPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVIS 213
G+ + PS+ FK +P++T + +HRNT + S+I+
Sbjct: 154 GAKLYPSVIFKMLT-SPRVTLSRSKLHRNTSVMDKISIIA 192
>03_02_1004 + 13133261-13133971,13134052-13134915
Length = 524
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 142 EAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVL 237
EA VVEEEG+A +R ++ + + DGR +
Sbjct: 70 EAAAVVEEEGEAAVRLFVGLPSDVVTADGRAV 101
>01_05_0162 +
18759647-18759663,18760128-18760131,18760270-18760617,
18760801-18761016,18763367-18763435,18763560-18764209,
18764993-18765089,18765170-18765223,18765305-18765435,
18766818-18767008,18767937-18768574
Length = 804
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 248 NTPIRTLPSVISILNFIFNHFLSF-AFPSSSTT*GASEVV 132
NTP+ L +I +L+ IFN +S A P SS G+ + +
Sbjct: 459 NTPVEQLEKIIIMLSRIFNTGISMVAVPDSSAINGSEDTM 498
>03_05_0207 -
21985340-21985570,21986430-21986636,21999578-21999667,
21999764-21999945,22000130-22001042,22003184-22003266,
22004622-22004939,22005044-22005107
Length = 695
Score = 27.5 bits (58), Expect = 5.9
Identities = 25/91 (27%), Positives = 39/91 (42%)
Frame = +1
Query: 43 KYFQTLARNSFIVQGKRFEQAKEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMT 222
K LA N+ I +GK + KE + + N+ + A +E + LR K +M
Sbjct: 498 KELNYLATNTNIDRGKLVAE-KEKNAKENELLNLANLKQKEADEELLRLVEKHKGLEKMA 556
Query: 223 DGRVLIGVFLCTDRDANVILGACSEYLKNNE 315
R +IGV + D AC + NN+
Sbjct: 557 GVRSIIGVKRMGELDQKAFYNACKNKMPNNK 587
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,225,907
Number of Sequences: 37544
Number of extensions: 179157
Number of successful extensions: 417
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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