Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30k23
(476 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT022486-1|AAY54902.1| 121|Drosophila melanogaster IP06106p pro... 99 2e-21
AE014134-505|AAN10396.1| 121|Drosophila melanogaster CG31950-PA... 99 2e-21
L02919-1|AAA28858.1| 199|Drosophila melanogaster ribonucleoprot... 58 6e-09
AY061171-1|AAL28719.1| 199|Drosophila melanogaster LD14049p pro... 58 6e-09
AE014134-1881|AAF52947.1| 199|Drosophila melanogaster CG5352-PA... 58 6e-09
BT029129-1|ABJ17062.1| 994|Drosophila melanogaster IP16092p pro... 37 0.012
AF205831-1|AAF14808.1| 717|Drosophila melanogaster Melted protein. 37 0.012
AE014296-1200|AAF50606.1| 992|Drosophila melanogaster CG8624-PA... 37 0.012
AE014296-1199|AAX52758.1| 988|Drosophila melanogaster CG8624-PB... 37 0.012
BT023632-1|AAY85032.1| 95|Drosophila melanogaster IP05684p pro... 36 0.037
AE014296-355|AAF47567.1| 95|Drosophila melanogaster CG2021-PA ... 36 0.037
BT022249-1|AAY54665.1| 137|Drosophila melanogaster IP04848p pro... 33 0.15
BT022238-1|AAY54654.1| 137|Drosophila melanogaster IP04948p pro... 33 0.15
AE013599-3148|AAF46688.1| 137|Drosophila melanogaster CG4279-PA... 33 0.15
AY070698-1|AAL48169.1| 76|Drosophila melanogaster RH35475p pro... 31 0.61
AE014298-2437|AAF48634.1| 76|Drosophila melanogaster CG9742-PA... 31 0.61
BT022501-1|AAY54917.1| 127|Drosophila melanogaster IP06306p pro... 30 1.4
BT022369-1|AAY54785.1| 99|Drosophila melanogaster IP05148p pro... 29 2.5
BT022354-1|AAY54770.1| 81|Drosophila melanogaster IP05048p pro... 29 2.5
AY061330-1|AAL28878.1| 894|Drosophila melanogaster LD25692p pro... 29 2.5
AE014134-3048|AAF53766.1| 894|Drosophila melanogaster CG10689-P... 29 2.5
BT022472-1|AAY54888.1| 430|Drosophila melanogaster IP11764p pro... 29 4.3
AE014296-3301|AAF49050.1| 430|Drosophila melanogaster CG13813-P... 29 4.3
AF195189-1|AAF27818.1| 229|Drosophila melanogaster yippee inter... 28 5.7
AY070977-1|AAL48599.1| 308|Drosophila melanogaster RE07468p pro... 27 9.9
AF145313-1|AAF08394.1| 308|Drosophila melanogaster 26S proteaso... 27 9.9
AE014134-869|AAF52215.1| 308|Drosophila melanogaster CG18174-PA... 27 9.9
>BT022486-1|AAY54902.1| 121|Drosophila melanogaster IP06106p
protein.
Length = 121
Score = 99 bits (238), Expect = 2e-21
Identities = 49/98 (50%), Positives = 66/98 (67%), Gaps = 4/98 (4%)
Frame = +1
Query: 130 KTTSEAPQVVEEE----GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSE 297
+ T+ AP + + G+ KL+KWL RI +TDGRVL+G F CTDRDAN++L C+E
Sbjct: 24 RITTNAPHQMNDASLTPGRRKLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAE 83
Query: 298 YLKNNEGETEEPRVLGLVMVPGRHIVSIQIDDTTPSQT 411
YL E +EPR+LG VMVPG+HIVS+ ID+ P +
Sbjct: 84 YLV----EGQEPRLLGNVMVPGQHIVSLSIDEPDPQSS 117
>AE014134-505|AAN10396.1| 121|Drosophila melanogaster CG31950-PA
protein.
Length = 121
Score = 99 bits (238), Expect = 2e-21
Identities = 49/98 (50%), Positives = 66/98 (67%), Gaps = 4/98 (4%)
Frame = +1
Query: 130 KTTSEAPQVVEEE----GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSE 297
+ T+ AP + + G+ KL+KWL RI +TDGRVL+G F CTDRDAN++L C+E
Sbjct: 24 RITTNAPHQMNDASLTPGRRKLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAE 83
Query: 298 YLKNNEGETEEPRVLGLVMVPGRHIVSIQIDDTTPSQT 411
YL E +EPR+LG VMVPG+HIVS+ ID+ P +
Sbjct: 84 YLV----EGQEPRLLGNVMVPGQHIVSLSIDEPDPQSS 117
>L02919-1|AAA28858.1| 199|Drosophila melanogaster ribonucleoprotein
protein.
Length = 199
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = +1
Query: 178 KLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRVL 342
K+ + LN + RI + D R IG F D+ N+ILG C E+ K + E EE RVL
Sbjct: 8 KMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVL 67
Query: 343 GLVMVPGRHIVSIQIDDTTPSQ 408
G V++ G +IVS+ ++ P +
Sbjct: 68 GFVLLRGENIVSLTVEGPPPPE 89
>AY061171-1|AAL28719.1| 199|Drosophila melanogaster LD14049p
protein.
Length = 199
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = +1
Query: 178 KLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRVL 342
K+ + LN + RI + D R IG F D+ N+ILG C E+ K + E EE RVL
Sbjct: 8 KMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVL 67
Query: 343 GLVMVPGRHIVSIQIDDTTPSQ 408
G V++ G +IVS+ ++ P +
Sbjct: 68 GFVLLRGENIVSLTVEGPPPPE 89
>AE014134-1881|AAF52947.1| 199|Drosophila melanogaster CG5352-PA
protein.
Length = 199
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = +1
Query: 178 KLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRVL 342
K+ + LN + RI + D R IG F D+ N+ILG C E+ K + E EE RVL
Sbjct: 8 KMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVL 67
Query: 343 GLVMVPGRHIVSIQIDDTTPSQ 408
G V++ G +IVS+ ++ P +
Sbjct: 68 GFVLLRGENIVSLTVEGPPPPE 89
>BT029129-1|ABJ17062.1| 994|Drosophila melanogaster IP16092p
protein.
Length = 994
Score = 37.1 bits (82), Expect = 0.012
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = -1
Query: 374 TMCLPGTMTRPNTLGSSV---SPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVISILN 204
T+ + RP++ G S S ++ KYS A + S+S+ ++ + TLPS N
Sbjct: 547 TVTTSPSKVRPHSQGPSTLLNSSTVLMKYSTDALNQSVGSISIPQSAAVATLPST-QTQN 605
Query: 203 FIFNHFLSFAFPSSSTT*GASEVVLLP 123
+ H S A P S++ A V+ LP
Sbjct: 606 AVSVHHASPALPQSASNGHAKSVMKLP 632
>AF205831-1|AAF14808.1| 717|Drosophila melanogaster Melted protein.
Length = 717
Score = 37.1 bits (82), Expect = 0.012
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = -1
Query: 374 TMCLPGTMTRPNTLGSSV---SPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVISILN 204
T+ + RP++ G S S ++ KYS A + S+S+ ++ + TLPS N
Sbjct: 547 TVTTSPSKVRPHSQGPSTLLNSSTVLMKYSTDALNQSVGSISIPQSAAVATLPST-QTQN 605
Query: 203 FIFNHFLSFAFPSSSTT*GASEVVLLP 123
+ H S A P S++ A V+ LP
Sbjct: 606 AVSVHHASPALPQSASNGHAKSVMKLP 632
>AE014296-1200|AAF50606.1| 992|Drosophila melanogaster CG8624-PA,
isoform A protein.
Length = 992
Score = 37.1 bits (82), Expect = 0.012
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = -1
Query: 374 TMCLPGTMTRPNTLGSSV---SPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVISILN 204
T+ + RP++ G S S ++ KYS A + S+S+ ++ + TLPS N
Sbjct: 545 TVTTSPSKVRPHSQGPSTLLNSSTVLMKYSTDALNQSVGSISIPQSAAVATLPST-QTQN 603
Query: 203 FIFNHFLSFAFPSSSTT*GASEVVLLP 123
+ H S A P S++ A V+ LP
Sbjct: 604 AVSVHHASPALPQSASNGHAKSVMKLP 630
>AE014296-1199|AAX52758.1| 988|Drosophila melanogaster CG8624-PB,
isoform B protein.
Length = 988
Score = 37.1 bits (82), Expect = 0.012
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = -1
Query: 374 TMCLPGTMTRPNTLGSSV---SPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVISILN 204
T+ + RP++ G S S ++ KYS A + S+S+ ++ + TLPS N
Sbjct: 547 TVTTSPSKVRPHSQGPSTLLNSSTVLMKYSTDALNQSVGSISIPQSAAVATLPST-QTQN 605
Query: 203 FIFNHFLSFAFPSSSTT*GASEVVLLP 123
+ H S A P S++ A V+ LP
Sbjct: 606 AVSVHHASPALPQSASNGHAKSVMKLP 632
>BT023632-1|AAY85032.1| 95|Drosophila melanogaster IP05684p
protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = +1
Query: 181 LRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGLVMVP 360
L ++N I DGR IG D+ N+I+ C E + + E+ VLGL ++
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQ-IVLGLHIIR 62
Query: 361 GRHIVSIQIDDTT 399
G +I I + D T
Sbjct: 63 GDNIAVIGLIDET 75
>AE014296-355|AAF47567.1| 95|Drosophila melanogaster CG2021-PA
protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = +1
Query: 181 LRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGLVMVP 360
L ++N I DGR IG D+ N+I+ C E + + E+ VLGL ++
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQ-IVLGLHIIR 62
Query: 361 GRHIVSIQIDDTT 399
G +I I + D T
Sbjct: 63 GDNIAVIGLIDET 75
>BT022249-1|AAY54665.1| 137|Drosophila melanogaster IP04848p
protein.
Length = 137
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 169 GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGL 348
G A L + ++ K + + DGR LIG D+ AN++L E + + PR G+
Sbjct: 9 GTAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNEYGDIPR--GV 66
Query: 349 VMVPGRHIVSI-QID 390
++ G ++V + +ID
Sbjct: 67 FIIRGENVVLLGEID 81
>BT022238-1|AAY54654.1| 137|Drosophila melanogaster IP04948p
protein.
Length = 137
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 169 GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGL 348
G A L + ++ K + + DGR LIG D+ AN++L E + + PR G+
Sbjct: 9 GTAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNEYGDIPR--GV 66
Query: 349 VMVPGRHIVSI-QID 390
++ G ++V + +ID
Sbjct: 67 FIIRGENVVLLGEID 81
>AE013599-3148|AAF46688.1| 137|Drosophila melanogaster CG4279-PA
protein.
Length = 137
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 169 GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGL 348
G A L + ++ K + + DGR LIG D+ AN++L E + + PR G+
Sbjct: 9 GTAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNEYGDIPR--GV 66
Query: 349 VMVPGRHIVSI-QID 390
++ G ++V + +ID
Sbjct: 67 FIIRGENVVLLGEID 81
>AY070698-1|AAL48169.1| 76|Drosophila melanogaster RH35475p
protein.
Length = 76
Score = 31.5 bits (68), Expect = 0.61
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = +1
Query: 178 KLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGLVMV 357
+++K+++ + +++ GR + G+ D NV+L E K+N +G+V++
Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNN-----IGMVVI 62
Query: 358 PGRHIVSIQIDD 393
G IV ++ D
Sbjct: 63 RGNSIVMVEALD 74
>AE014298-2437|AAF48634.1| 76|Drosophila melanogaster CG9742-PA
protein.
Length = 76
Score = 31.5 bits (68), Expect = 0.61
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = +1
Query: 178 KLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGLVMV 357
+++K+++ + +++ GR + G+ D NV+L E K+N +G+V++
Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNN-----IGMVVI 62
Query: 358 PGRHIVSIQIDD 393
G IV ++ D
Sbjct: 63 RGNSIVMVEALD 74
>BT022501-1|AAY54917.1| 127|Drosophila melanogaster IP06306p
protein.
Length = 127
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 130 KTTSEAPQVVEEE----GKAKLRKWLNMKFRIEMTDGR 231
+ T+ AP + + G+ KL+KWL RI +TDGR
Sbjct: 24 RITTNAPHQMNDASLTPGRRKLQKWLGRVLRIVITDGR 61
>BT022369-1|AAY54785.1| 99|Drosophila melanogaster IP05148p
protein.
Length = 99
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 169 GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVIL 282
G A L + ++ K + + DGR LIG D+ AN++L
Sbjct: 26 GTAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVL 63
>BT022354-1|AAY54770.1| 81|Drosophila melanogaster IP05048p
protein.
Length = 81
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 169 GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVIL 282
G A L + ++ K + + DGR LIG D+ AN++L
Sbjct: 11 GTAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVL 48
>AY061330-1|AAL28878.1| 894|Drosophila melanogaster LD25692p
protein.
Length = 894
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -2
Query: 427 IHHNS-MFE----MVLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 305
IH NS +FE VLYH+ V T + +++ W+L+ PHY+
Sbjct: 824 IHPNSSLFEELPRWVLYHELVFTSKEYMRQVIEIESKWLLEVAPHYY 870
>AE014134-3048|AAF53766.1| 894|Drosophila melanogaster CG10689-PA
protein.
Length = 894
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -2
Query: 427 IHHNS-MFE----MVLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 305
IH NS +FE VLYH+ V T + +++ W+L+ PHY+
Sbjct: 824 IHPNSSLFEELPRWVLYHELVFTSKEYMRQVIEIESKWLLEVAPHYY 870
>BT022472-1|AAY54888.1| 430|Drosophila melanogaster IP11764p
protein.
Length = 430
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 70 SFIVQGK---RFEQAKEMSNEGNKTTSEAPQVVEEEGKAKLRK 189
SFI+Q +F+Q E + N TS+ +V E GKA+LRK
Sbjct: 156 SFILQQTDPLQFKQLVEFVEKDNLFTSDIEEVTIEFGKAQLRK 198
>AE014296-3301|AAF49050.1| 430|Drosophila melanogaster CG13813-PA
protein.
Length = 430
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 70 SFIVQGK---RFEQAKEMSNEGNKTTSEAPQVVEEEGKAKLRK 189
SFI+Q +F+Q E + N TS+ +V E GKA+LRK
Sbjct: 156 SFILQQTDPLQFKQLVEFVEKDNLFTSDIEEVTIEFGKAQLRK 198
>AF195189-1|AAF27818.1| 229|Drosophila melanogaster yippee
interacting protein 5 protein.
Length = 229
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 205 FRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQ 384
+ I+ G+V+I F + + ++LG +N G ++P V L+ RH SI
Sbjct: 65 YSIQSVKGKVVIDAFRLINPNM-LVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSIS 123
Query: 385 ID 390
I+
Sbjct: 124 IN 125
>AY070977-1|AAL48599.1| 308|Drosophila melanogaster RE07468p
protein.
Length = 308
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 211 IEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQID 390
I+ G+V+I F + + ++LG +N G ++P V L+ RH SI I+
Sbjct: 146 IQSVKGKVVIDAFRLINPNM-LVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISIN 204
>AF145313-1|AAF08394.1| 308|Drosophila melanogaster 26S proteasome
regulatory complexsubunit p37B protein.
Length = 308
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 211 IEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQID 390
I+ G+V+I F + + ++LG +N G ++P V L+ RH SI I+
Sbjct: 146 IQSVKGKVVIDAFRLINPNM-LVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISIN 204
>AE014134-869|AAF52215.1| 308|Drosophila melanogaster CG18174-PA
protein.
Length = 308
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 211 IEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQID 390
I+ G+V+I F + + ++LG +N G ++P V L+ RH SI I+
Sbjct: 146 IQSVKGKVVIDAFRLINPNM-LVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISIN 204
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,875,460
Number of Sequences: 53049
Number of extensions: 328218
Number of successful extensions: 881
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1643002263
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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