Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30k23
(476 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 61 3e-10
AC024796-8|AAK29897.2| 103|Caenorhabditis elegans Hypothetical ... 48 5e-06
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 40 7e-04
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 30 0.75
Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue... 28 3.0
U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeas... 28 3.0
U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeas... 28 3.0
U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeas... 28 3.0
U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeas... 28 3.0
U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeas... 28 3.0
AF040661-7|AAG24223.1| 439|Caenorhabditis elegans Hypothetical ... 28 3.0
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 28 4.0
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 28 4.0
Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical pr... 27 5.3
U41534-4|AAB47596.1| 323|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z75550-6|CAA99930.1| 591|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF040647-6|AAR30205.3| 436|Caenorhabditis elegans Hypothetical ... 27 7.0
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 27 9.2
U88184-10|AAK31514.2| 728|Caenorhabditis elegans Hypothetical p... 27 9.2
U88184-9|ABC71833.1| 843|Caenorhabditis elegans Hypothetical pr... 27 9.2
U41017-6|AAC48215.1| 399|Caenorhabditis elegans C.elegans homeo... 27 9.2
U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical pr... 27 9.2
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 61.3 bits (142), Expect = 3e-10
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Frame = +1
Query: 178 KLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEY--LKNNEG---ETEEPRVL 342
K+ LN + +I + DGR IG F D+ N++L C E+ +K G + EE R+L
Sbjct: 8 KMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRIL 67
Query: 343 GLVMVPGRHIVSIQIDDTTP 402
GLV+V G HIVS+ +D P
Sbjct: 68 GLVLVRGEHIVSMTVDGPPP 87
>AC024796-8|AAK29897.2| 103|Caenorhabditis elegans Hypothetical
protein Y48G1C.9 protein.
Length = 103
Score = 47.6 bits (108), Expect = 5e-06
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +1
Query: 160 EEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRV 339
+ E K+ +++ ++ I MTDGR + G + TD+DAN++ E + + + + R
Sbjct: 20 KSEAHLKVLEYIGKRYEIRMTDGRYIRGTMIATDKDANMVFNKADERW-DKDPQLKGVRF 78
Query: 340 LGLVMVPGRHIVSI 381
LG M+ +H+ S+
Sbjct: 79 LGQAMISKKHVESM 92
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 40.3 bits (90), Expect = 7e-04
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +1
Query: 160 EEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGET---EE 330
++E L ++L+ + R++ GR GV D+ N++L C EYL++ + + +E
Sbjct: 9 KKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDE 68
Query: 331 PRVLGLVMVPGRHIVSIQIDD 393
R LGL++ G I + D
Sbjct: 69 TRQLGLIVARGTAITVVSPAD 89
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 30.3 bits (65), Expect = 0.75
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +1
Query: 169 GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSE--YLKNNEGETEEPRVL 342
G L + L+ K + + DGR LIG D+ AN+IL E +++ ET +
Sbjct: 10 GAISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ---- 65
Query: 343 GLVMVPGRHI-VSIQIDDT 396
G +++ G ++ ++ +IDDT
Sbjct: 66 GFMLIRGENVELAGEIDDT 84
>Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue
protein.
Length = 897
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 76 IVQGKRFEQAKEMSNEGNKTTSEAPQVVEEEGK 174
+VQ ++EQ +++ EGN P V EEEGK
Sbjct: 416 LVQALKYEQGQQLPEEGN----PVPVVSEEEGK 444
>U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform b
protein.
Length = 650
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 76 IVQGKRFEQAKEMSNEGNKTTSEAPQVVEEEGK 174
+VQ ++EQ +++ EGN P V EEEGK
Sbjct: 169 LVQALKYEQGQQLPEEGN----PVPVVSEEEGK 197
>U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform d
protein.
Length = 716
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 76 IVQGKRFEQAKEMSNEGNKTTSEAPQVVEEEGK 174
+VQ ++EQ +++ EGN P V EEEGK
Sbjct: 416 LVQALKYEQGQQLPEEGN----PVPVVSEEEGK 444
>U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform c
protein.
Length = 897
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 76 IVQGKRFEQAKEMSNEGNKTTSEAPQVVEEEGK 174
+VQ ++EQ +++ EGN P V EEEGK
Sbjct: 416 LVQALKYEQGQQLPEEGN----PVPVVSEEEGK 444
>U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform e
protein.
Length = 720
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 76 IVQGKRFEQAKEMSNEGNKTTSEAPQVVEEEGK 174
+VQ ++EQ +++ EGN P V EEEGK
Sbjct: 420 LVQALKYEQGQQLPEEGN----PVPVVSEEEGK 448
>U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform a
protein.
Length = 901
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 76 IVQGKRFEQAKEMSNEGNKTTSEAPQVVEEEGK 174
+VQ ++EQ +++ EGN P V EEEGK
Sbjct: 420 LVQALKYEQGQQLPEEGN----PVPVVSEEEGK 448
>AF040661-7|AAG24223.1| 439|Caenorhabditis elegans Hypothetical
protein W10G11.17 protein.
Length = 439
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 88 KRFEQAKEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGV 246
+R ++A E K +SE V ++ WLN++ I+ TDG + +
Sbjct: 258 RRRKRAAGSDEEDEKKSSETVIDVHQDSGENDEDWLNVRQVIKTTDGETTVAI 310
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 317 PSLFFKYSEQAPKI-TFASLSVHRNTPIRTLPSVISILNFIFNHFLSFAFP 168
P +F KY + FA SVH SV+++ F FL+ A+P
Sbjct: 127 PIMFMKYMSHTWSMGRFACYSVHYIQQFTCFCSVLTMTMISFERFLAIAYP 177
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 317 PSLFFKYSEQAPKI-TFASLSVHRNTPIRTLPSVISILNFIFNHFLSFAFP 168
P +F KY + FA SVH SV+++ F FL+ A+P
Sbjct: 127 PIMFMKYMSHTWSMGRFACYSVHYIQQFTCFCSVLTMTMISFERFLAIAYP 177
>Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical
protein C10C6.5 protein.
Length = 610
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 329 SSVSPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVISILNFI 198
S +SPSL S P +T SL+ + LPS IS + ++
Sbjct: 492 SCISPSLPIAMSTAGPMLTLLSLTGGLYANVGALPSYISWIQYL 535
>U41534-4|AAB47596.1| 323|Caenorhabditis elegans Hypothetical
protein C16A3.6 protein.
Length = 323
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 97 EQAKEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGR 231
EQ +E S+E ++ + P +EE K K++K K + DG+
Sbjct: 253 EQEQEDSDEDDEEGGDEPMEIEEPPKKKVKKEPKKKTGKKAADGK 297
>Z75550-6|CAA99930.1| 591|Caenorhabditis elegans Hypothetical
protein T22C1.8 protein.
Length = 591
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 157 VEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVI 279
V E+GKAK ++ K MT G I L D+DAN+I
Sbjct: 223 VMEDGKAKCAQYYPEKAGEAMTFGAWTILCSLEDDKDANII 263
>AF040647-6|AAR30205.3| 436|Caenorhabditis elegans Hypothetical
protein F54D12.7 protein.
Length = 436
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 214 EMTDGRVLIGVFLCTDRDANVILGACSEYLKNN 312
E ++L C DR +++LG +EY KNN
Sbjct: 88 ESVSFKILNSPAKCADRAEDMLLGITNEYNKNN 120
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 148 PQVVEEEGKAKLRKWLNMKFRIEMTDGRVLI 240
P V G+ ++ KWL +KFR+ D RV +
Sbjct: 829 PSVNTYPGQLQIFKWLALKFRLLAEDLRVYV 859
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 145 APQVVEEEGKAKLRKWLNMKFRI 213
APQ++E+E + ++R+ L +K R+
Sbjct: 563 APQIIEQETECRIREALYIKLRV 585
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 145 APQVVEEEGKAKLRKWLNMKFRI 213
APQ++E+E + ++R+ L +K R+
Sbjct: 563 APQIIEQETECRIREALYIKLRV 585
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 148 PQVVEEEGKAKLRKWLNMKFRIEMTDGRVLI 240
P V G+ ++ KWL +KFR+ D RV +
Sbjct: 829 PSVNTYPGQLQIFKWLALKFRLLAEDLRVYV 859
>U88184-10|AAK31514.2| 728|Caenorhabditis elegans Hypothetical
protein F36H5.3a protein.
Length = 728
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 250 LCTDRDANVILGACSEYLKNNEGET 324
LCT D + I G C+ YLK++EG++
Sbjct: 203 LCTPNDWH-IQGVCTFYLKSDEGKS 226
>U88184-9|ABC71833.1| 843|Caenorhabditis elegans Hypothetical
protein F36H5.3b protein.
Length = 843
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 250 LCTDRDANVILGACSEYLKNNEGET 324
LCT D + I G C+ YLK++EG++
Sbjct: 203 LCTPNDWH-IQGVCTFYLKSDEGKS 226
>U41017-6|AAC48215.1| 399|Caenorhabditis elegans C.elegans homeobox
protein 39 protein.
Length = 399
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 283 GACSEYLKNNEGETEEPRVLGLV 351
G+ YL N G+TEEPR LV
Sbjct: 77 GSSPNYLTENGGDTEEPRFEELV 99
>U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical
protein F21D12.3 protein.
Length = 496
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 371 MCLPGTMTRPNTLGSSVSPSLFFKYSEQA 285
M L G T P +G +V PSLF+ YSE A
Sbjct: 375 MNLVGASTIP--MGCAVLPSLFYLYSEAA 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,565,209
Number of Sequences: 27780
Number of extensions: 183881
Number of successful extensions: 619
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -