Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30k21
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0675 - 5508815-5511277 37 0.013
11_01_0674 - 5502275-5502954,5503054-5504746 36 0.022
11_04_0399 - 17237152-17237628 30 1.1
02_02_0006 - 6037539-6038570 29 2.5
12_01_0238 - 1789114-1790211 29 3.4
04_02_0009 + 8476600-8477125,8478711-8478730 28 4.4
02_05_0770 - 31623415-31623960,31624467-31624709,31624808-316249... 28 4.4
01_01_0760 + 5860893-5861065,5861549-5862443 28 4.4
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 28 5.9
02_05_0072 - 25598690-25598702,25598820-25599001,25599111-255992... 27 7.7
>11_01_0675 - 5508815-5511277
Length = 820
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -3
Query: 285 FARILVTFRSKPSTLLPCVLTACWKCAIYKVYDSGVA*VSAARGRRQFCRPFIS-VFHFD 109
F+R+L TFR L P L+ VY G+ + GRR + S +HFD
Sbjct: 677 FSRVLTTFRGTKGYLAPEWLSGVAITPKVDVYSFGMVLLEIISGRRNLSEAYTSNHYHFD 736
Query: 108 HQPLHVSTYLHK 73
+ P+ + LH+
Sbjct: 737 YFPVQAISKLHE 748
>11_01_0674 - 5502275-5502954,5503054-5504746
Length = 790
Score = 35.9 bits (79), Expect = 0.022
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -3
Query: 285 FARILVTFRSKPSTLLPCVLTACWKCAIYKVYDSGVA*VSAARGRRQFCRPFIS-VFHFD 109
F+R+L TFR L P L+ VY G+ + GRR + S +HFD
Sbjct: 652 FSRVLTTFRGTKGYLAPEWLSGVAITPKVDVYSFGMVLLEIISGRRNLSDAYTSNHYHFD 711
Query: 108 HQPLHVSTYLHK 73
+ P+ + LH+
Sbjct: 712 YFPVQAISKLHE 723
>11_04_0399 - 17237152-17237628
Length = 158
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 551 PTFRI*RER-SKRPSRTAVDLSADAGPRSAGTWRRRHLRSSV 429
PT I R R S RP A + G +G+WRRR R V
Sbjct: 113 PTATIRRRRASSRPDPVAAGAAGGIGGGGSGSWRRRRERGQV 154
>02_02_0006 - 6037539-6038570
Length = 343
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 175 LSVSRPGQKTILPSFYFGISL*SSTTTRKYL 83
LSV R G LP+F FG S+ +TT YL
Sbjct: 125 LSVRRSGAYASLPAFLFGESMGGATTLLAYL 155
>12_01_0238 - 1789114-1790211
Length = 365
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 493 YLLTLAQGQRGHGGAGTFGPVSR 425
Y LT+A+ + G GGAGT G ++R
Sbjct: 78 YFLTVAKWKGGRGGAGTAGRLNR 100
>04_02_0009 + 8476600-8477125,8478711-8478730
Length = 181
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 542 RI*RERSKRPSRTAVDLSADAGPRSAGTWRRR 447
R+ R++ +RP+R D +A G WRRR
Sbjct: 138 RLRRQQRRRPTRRCTDPTAALAGGGRGRWRRR 169
>02_05_0770 -
31623415-31623960,31624467-31624709,31624808-31624906,
31625058-31625234,31625441-31625512
Length = 378
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +2
Query: 368 ANLPELSNRSALQC-----LAYTCSRHWTEGAGAAMSPLTLGQRQQISPLQFDWVVLNVH 532
A L +LS ++AL C Y +R+W M TL R + P + W +
Sbjct: 30 AALGQLSGKAALYCSDASIARYLVARNWEVKKATKMLKKTLKWRSEYKPDEIRWDEIANE 89
Query: 533 AKSGK 547
A +GK
Sbjct: 90 AATGK 94
>01_01_0760 + 5860893-5861065,5861549-5862443
Length = 355
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -3
Query: 330 TILVWCASTPGWLKWFARILVTFRSKPSTLLPCVLTACWKCAIYKVYDSGVA*VSAAR 157
T+L+ ++ WL W + R P+ LL W+C I VA V+AAR
Sbjct: 163 TVLILLSNVT-WLLWSMLMAPVLREYPNKLL----ATTWQCVISAAQSLAVAAVAAAR 215
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 410 LAYTCSRHWTEGAGAAMSPLTLGQRQQISPLQFDWVVL-NVHAKSGKWDIL 559
+A C R++ G AM L L + + WV L NV+A +GKWD++
Sbjct: 378 VACRCHRNFEMGQMVAMEILRLDPQHAGA-----WVFLSNVYAAAGKWDLV 423
>02_05_0072 -
25598690-25598702,25598820-25599001,25599111-25599269,
25599450-25599753,25600176-25600332,25600439-25600484
Length = 286
Score = 27.5 bits (58), Expect = 7.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 180 RHCHTLCRWRTSSTPL 227
R CH CRW++ + PL
Sbjct: 26 RSCHRTCRWKSHAAPL 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,268,019
Number of Sequences: 37544
Number of extensions: 350689
Number of successful extensions: 1147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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