Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30k21
         (560 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   1.3  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   5.2  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   6.8  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    23   9.0  
AJ439398-2|CAD28125.1|  568|Anopheles gambiae putative 5' nucleo...    23   9.0  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
            transcriptase protein.
          Length = 1049

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 305  VDAHQTKMVDAYVKLLEWQKLANLPELSNRSAL 403
            ++A Q K+    ++LL WQ   NLP  + R  L
Sbjct: 918  IEAIQRKLTRYALRLLPWQDRNNLPPYAARCRL 950


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -3

Query: 384 NSGRFASFCHSSNLT*ASTIL----VWCASTPG 298
           N+GR+A  C       A+  L    +WC++TPG
Sbjct: 45  NNGRWAFDCSKKVAIVATGSLPLQRIWCSNTPG 77


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 436 DRRCRRRHVPADLGPASADK 495
           D R   R++   +GPASAD+
Sbjct: 252 DTRSDHRYITYSVGPASADQ 271


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 432 CREHVYARHCNADLLLNSGRFASFCHSSNLT*ASTILVWCASTPG 298
           CR+ V+ R C+    + +  F   C + N    S   V CA   G
Sbjct: 13  CRDIVWLRSCSCHSSVCAVSFVMQCSTCNAPTDSANSVSCAGVCG 57


>AJ439398-2|CAD28125.1|  568|Anopheles gambiae putative 5'
           nucleotidase protein.
          Length = 568

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 301 GLVEVVRQDIGHLPQQAV-HVVAL 233
           G VE +R +IG L ++ + H+V L
Sbjct: 214 GEVEQLRMEIGRLKEEGIQHIVVL 237


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,443
Number of Sequences: 2352
Number of extensions: 13742
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)