Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30k21
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    28   5.3  
AF016685-3|AAG24145.2|  422|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 434 WTEGAGAAMSPLTLGQRQQISPLQFDWVVLN 526
           +T   G    P+ L ++ Q  PL FDW+ +N
Sbjct: 246 FTIDCGKLAFPVDLRKQVQTGPLDFDWIEIN 276


>AF016685-3|AAG24145.2|  422|Caenorhabditis elegans Hypothetical
           protein F59E11.11 protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 179 TPLSYTL*MAHFQHAVKTQGNNVDGLLRKVTNILANHFNQPGVDAHQTKMVDAYVKLL-- 352
           T L++ L     +   K  G +V+ + +K+ ++LAN  ++   D   ++      KLL  
Sbjct: 325 TELAFILGQLCLKLTGKMLGGDVEEVTQKLQDVLANDLHEHYKDQEVSRYAHRLTKLLSI 384

Query: 353 --EWQKLAN 373
             +WQ L N
Sbjct: 385 NNDWQSLLN 393


>Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical
           protein K08E3.7 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 66  CDFCANKYLRVVVDDQSEIPK*KDGKIVFCP----GRLTLKLRHCHTLCRWRTSSTPLRR 233
           C FC   YL   ++    + +   G  +FCP     R+   + H H +   +TS +  +R
Sbjct: 211 CQFCFRDYLLSQLERFGFVNQPPHGFTIFCPYPGCNRVVQDVHHFHIM--GQTSYSEYQR 268

Query: 234 KAT 242
           KAT
Sbjct: 269 KAT 271


>U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical
           protein T24C12.3 protein.
          Length = 651

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -2

Query: 322 GLVRVHAGLVEV--VRQDIGHLPQQAVHVVALRLNGVLEVRHLQSV*QWRSLSVSRPGQK 149
           G+  VH G  +   V  D+  L Q  V VV   +  +L++       +  S++    GQ+
Sbjct: 136 GIGGVHRGADQTFDVSADLQELSQTPVCVVCSGVKSILDIPKTVEYLETHSVNCIVYGQE 195

Query: 148 TILPSFY 128
            + PSF+
Sbjct: 196 NVFPSFF 202


>U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical
           protein F53B1.8 protein.
          Length = 809

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -3

Query: 528 TFKTTQSNCSGLIC*RWPKVSGDMAAPAP--SVQCREHVYARHCNADLLLNSGRFASFCH 355
           ++  +QSN S   C     +  DM +P     +QC+     +H +++L      FA F H
Sbjct: 196 SYSASQSNMSFGTCSIEHLLQNDMTSPEALAQIQCQSENQDQHSSSNLYFYLFCFAHFLH 255

Query: 354 SSNLT*ASTI 325
               T   TI
Sbjct: 256 GIGATPLFTI 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,500,621
Number of Sequences: 27780
Number of extensions: 282837
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)