Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30k21
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.5  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 264 R*PISWRTTSTSPAWTRTKPKWLMLTLNY 350
           R P  W   STS  +++T   WL +  NY
Sbjct: 423 RTPYQW-DNSTSAGFSQTNKTWLPVNENY 450


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 160 PGQKTILPSFYFGISL 113
           P +KT L S Y+G+S+
Sbjct: 268 PTEKTPLISLYYGVSI 283


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 290 FNQ--PGVDAHQTKMVDAYVKLLEWQKLANLPELS 388
           FNQ    +D  +T+  D+   +  W+  A +PEL+
Sbjct: 322 FNQLISSLDEIRTRYKDSSSSVEGWENRATIPELN 356


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 152 LPRAADTQATPLSYTL*MAH 211
           +PR+ D + +P +YT  ++H
Sbjct: 931 IPRSDDIRLSPAAYTANVSH 950


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +3

Query: 300 PAWTRTKPKWLMLTLNYLNGRNW 368
           P W +    WL  + NY    NW
Sbjct: 652 PKWLQVLALWLNHSPNYDQVTNW 674


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,942
Number of Sequences: 438
Number of extensions: 3233
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)