Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30k19
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73103-1|CAA97424.1| 117|Caenorhabditis elegans Hypothetical pr... 47 1e-05
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 30 1.7
U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical pr... 29 2.2
U42841-14|AAC48172.3| 469|Caenorhabditis elegans Hypothetical p... 29 2.9
Z71261-4|CAA95804.1| 126|Caenorhabditis elegans Hypothetical pr... 28 5.1
U97017-6|AAB52362.1| 374|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 27 8.9
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z73103-1|CAA97424.1| 117|Caenorhabditis elegans Hypothetical
protein C08F8.1 protein.
Length = 117
Score = 46.8 bits (106), Expect = 1e-05
Identities = 32/115 (27%), Positives = 54/115 (46%)
Frame = +1
Query: 118 DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMA 297
D E+ +AF DLQ ET+ I + V + + T++ + L K Y S+
Sbjct: 3 DEEISKAFRDLQFKTNETRMRIVQGEQNKKVNYQKMRISESTKKNLVDLDENLKYYRSVG 62
Query: 298 RMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKR 462
RMF+ +D + +I+ + +K L L E+E+N+R+LIQ +R
Sbjct: 63 RMFLLTDKPAEISRHEAEAKQSKEKIEAIEKQKDYLEKGLVEAETNLRELIQSRR 117
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 259 VLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVC--LNHTLNESES 432
VL P YE A + VQSD +L + LI + +L ++ + NH+ N
Sbjct: 206 VLDPAI-AYEISATVTVQSD-----PDLEIDYDNLIQSLKELQDQAIVRPANHSSNRLSE 259
Query: 433 NIRDLIQQKRMKNENQPAAES 495
R L+ ++R + N P +S
Sbjct: 260 ETRKLLNKRRFMDRNDPQFKS 280
>U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical
protein C06A8.5 protein.
Length = 479
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +1
Query: 313 SDLEHIKQNLRQKTNTLISRIDDLNNR------KVCLNHTLNESESNIRDLIQQKRMKN 471
+D+E +K+ LRQK L DDL N+ K+ L E +RDL + KN
Sbjct: 12 ADVERLKKILRQKDEMLEEMEDDLKNQGKPCSSKLSLEERAQELSEQLRDLHVEMDGKN 70
>U42841-14|AAC48172.3| 469|Caenorhabditis elegans Hypothetical
protein T17H7.7 protein.
Length = 469
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +1
Query: 118 DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVL---PPGTKTYE 288
DLE+ Q F L + ETK +E ++ + +M T+ T E+ + P T T
Sbjct: 188 DLEVVQLFKKLNLSKEETKSIVERVEQVVREKLMSKMDTSSTTTEVTTVVTTPSTTTTTT 247
Query: 289 SMARMFVQSDLEHIKQNLRQK 351
S + + E I++ + ++
Sbjct: 248 STTQAPTTTTKEFIEEEIEEE 268
>Z71261-4|CAA95804.1| 126|Caenorhabditis elegans Hypothetical
protein F21C3.5 protein.
Length = 126
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Frame = +1
Query: 175 KTIENIDHQLAVLGRMQMHTNLTQR-----EIDVLPPGTKTYESMARMFVQSDLEHIKQN 339
+T+E D + R +M LT+ E+D++ +K Y+ + + V+ DLE +
Sbjct: 15 RTLEK-DREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEARST 73
Query: 340 LRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPAAES 495
+ ++ + S + ++ E + ++ QK + Q AA++
Sbjct: 74 VEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNM--QKSFQMMAQAAAQA 123
>U97017-6|AAB52362.1| 374|Caenorhabditis elegans Hypothetical
protein F47B3.7 protein.
Length = 374
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 355 NTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQP 483
NT SR ++ + ++HTLN+ S +RD + KN N P
Sbjct: 41 NTAQSRRMHVSIVRPWVHHTLNKGVSKLRDEFSEVANKNPNVP 83
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +1
Query: 259 VLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVC--LNHTLNESES 432
VL P Y A + VQSD +L + LI + +L ++ + NH+ N
Sbjct: 377 VLDPAI-AYAISATVTVQSD-----PDLDTDYDNLIQSLKELQDQAIVRPANHSSNRLSE 430
Query: 433 NIRDLIQQKRMKNENQPAAES 495
R L+ ++R + N P +S
Sbjct: 431 ETRKLLNKRRFMDRNDPQFKS 451
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +1
Query: 259 VLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVC--LNHTLNESES 432
VL P Y A + VQSD +L + LI + +L ++ + NH+ N
Sbjct: 116 VLDPAI-AYAISATVTVQSD-----PDLDTDYDNLIQSLKELQDQAIVRPANHSSNRLSE 169
Query: 433 NIRDLIQQKRMKNENQPAAES 495
R L+ ++R + N P +S
Sbjct: 170 ETRKLLNKRRFMDRNDPQFKS 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,072,968
Number of Sequences: 27780
Number of extensions: 244606
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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