Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30k18
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 87 8e-19
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 1.2
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 1.2
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 27 1.2
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 2.1
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 24 6.5
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 24 6.5
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 24 8.6
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 24 8.6
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 24 8.6
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 87.0 bits (206), Expect = 8e-19
Identities = 46/96 (47%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Frame = +3
Query: 78 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 254
M +YKD+I+GDE+ SD Y +K VD+++YE ++VT Q GD+ I G NPSAE+A+E +
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59
Query: 255 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK 362
E+ ++V + RL T +F DKKSY Y+K YMK
Sbjct: 60 EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMK 93
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 1.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 115 ISSPVIMSL*IFILMDWRRLKII 47
ISSP I + IFILM+ RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 137 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 27
+F + + L T + LI + +E+IK KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 1.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 180 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 323
+T G Q + F PS E +E TD+ ++ V ++ V F D
Sbjct: 6 LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 293 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 195
V++D +NS LDG + + S R +T LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 98 NVLIDLH-FDGLEAIKNNKNRKNGFSPQQLNR 6
N + +H F G++++++++ RKN F LN+
Sbjct: 7 NPELQIHGFIGVDSLQSSRKRKNDFDDFPLNK 38
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 188 SRHQPTGHFVNNFIDQFHFVSVREHLITSD 99
SRH+ HFV +F D ++ V E+ D
Sbjct: 65 SRHRNIIHFVESFEDNVYYYVVLEYCPLGD 94
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 23.8 bits (49), Expect = 8.6
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +3
Query: 120 SDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEE-----ADEGTDSAVES-GVDI 281
S+TY + DE+ + D E F EE A E ++ ++ +D+
Sbjct: 139 SNTY---VQDEIRFSSRNSKGVNYNEDAYFESFEEEEEEEMYEYATEVSEEPEDTRAIDV 195
Query: 282 VLNHRLVE 305
VL+HRL+E
Sbjct: 196 VLDHRLIE 203
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +3
Query: 147 DEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTD 254
DEV + +G G+ ++ + EE+DE D
Sbjct: 103 DEVFFSASGDATIHLSGNFLVDEEDEEEEESDEDYD 138
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 23.8 bits (49), Expect = 8.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 44 FYYF*SPPIHQNEDL*GHYHW 106
++Y PP H E H+HW
Sbjct: 45 YWYPPPPPRHHKEHKKSHHHW 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,597
Number of Sequences: 5004
Number of extensions: 27059
Number of successful extensions: 79
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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