Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30k18
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    69   9e-13
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109...    29   0.86 
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    29   1.5  
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    28   2.0  
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930...    27   3.5  
05_01_0015 + 117238-117996                                             27   6.1  
06_01_0750 + 5624983-5625173,5626229-5626291,5626421-5626967,562...    26   8.1  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 69.3 bits (162), Expect = 9e-13
 Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
 Frame = +3

Query: 78  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 248
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +   D+ I G NPSAE    DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59

Query: 249 TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK 362
            D      VDIV   RL E   F DKK +  ++K Y+K
Sbjct: 60  VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIK 96


>02_05_1057 +
           33809982-33810366,33810436-33810687,33810727-33810926,
           33811021-33811122
          Length = 312

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +3

Query: 114 MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLN 290
           +FS       VDE I +E+    +    G+I ++GF         G D+AVE  ++ V  
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV-- 158

Query: 291 HRLVETYAFGDKKS--YTLYLKD 353
            R+ E      K S  Y L L D
Sbjct: 159 -RVSEVRGIAGKASGTYVLVLLD 180


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 183 TRAQGDIQIEGFNPSAEEADEGTDSAVESGVD--IVLNHRLVETYAFGD 323
           TR+   +Q++GF PSA ++ +G+ + V S  +  IV   +L +T   G+
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGN 875


>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 201 IQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 329
           + I   N S EE +E  ++A    VD+ LN   +E   +G+KK
Sbjct: 711 VSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752


>06_01_1128 +
          9300144-9300273,9300340-9300472,9300585-9300656,
          9300783-9300926,9301453-9301524,9301584-9301677,
          9301782-9301928
          Length = 263

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 25 EKPFFRFLLFLIASNPS 75
          E PFF FLL L++S+PS
Sbjct: 2  EAPFFFFLLLLVSSSPS 18


>05_01_0015 + 117238-117996
          Length = 252

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 225 SAEEADEGTDSAVESGVDIVLNHRLVETYAF 317
           +A  ADEG  S +E G  +V   RLVE  ++
Sbjct: 14  TAASADEGQRSVLEFGAIVVCPRRLVEVDSY 44


>06_01_0750 +
           5624983-5625173,5626229-5626291,5626421-5626967,
           5627075-5627226,5627317-5627533
          Length = 389

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 114 MFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNP 224
           +F+  Y   +   V Y V G LVTRA+G + +  F P
Sbjct: 261 LFTAVYSGIVCSGVAYYVQG-LVTRARGPVFVTAFQP 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,055,565
Number of Sequences: 37544
Number of extensions: 160798
Number of successful extensions: 357
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)