Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30k16
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 274 7e-75
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 233 1e-62
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 159 4e-40
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 134 8e-33
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 119 4e-28
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 108 6e-25
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 106 3e-24
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 104 9e-24
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 103 2e-23
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 101 1e-22
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 99 3e-22
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 98 8e-22
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 96 3e-21
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 93 3e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 90 2e-19
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 88 1e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 85 6e-18
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 79 4e-16
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 75 9e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 73 3e-14
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 66 3e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 61 1e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 60 3e-10
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 44 2e-05
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 34 0.015
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.32
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.43
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.3
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.7
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.3
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 27 3.0
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.0
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 4.0
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 26 5.3
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 5.3
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 5.3
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 7.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 7.0
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 274 bits (672), Expect = 7e-75
Identities = 126/171 (73%), Positives = 155/171 (90%)
Frame = +1
Query: 127 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 306
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 307 SGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 486
SGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGG
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
Query: 487 TNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 639
T VR+D+ L++GVHVVVGTPGRV+DMI RRAL + +++FVLDEADEMLS
Sbjct: 125 TLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLS 175
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 233 bits (571), Expect = 1e-62
Identities = 113/172 (65%), Positives = 137/172 (79%), Gaps = 1/172 (0%)
Frame = +1
Query: 127 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 303
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 304 QSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 483
QSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIG
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIG 125
Query: 484 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 639
GT+V DI++L+ G HVV GTPGRV DMI RR L +K+ +LDEADE+L+
Sbjct: 126 GTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLN 177
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 159 bits (385), Expect = 4e-40
Identities = 83/191 (43%), Positives = 116/191 (60%), Gaps = 4/191 (2%)
Frame = +1
Query: 79 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 246
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 247 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQ 426
IQ+ +I + GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTS 129
Query: 427 KVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKL 606
+V LG H+N K GGT +R+DI +L VH+VVGTPGRV D+ + +
Sbjct: 130 QVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTT 189
Query: 607 FVLDEADEMLS 639
FV+DEAD++LS
Sbjct: 190 FVMDEADKLLS 200
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 134 bits (325), Expect = 8e-33
Identities = 69/160 (43%), Positives = 108/160 (67%), Gaps = 3/160 (1%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSI 339
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 340 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI-RQL 516
++L ++D S+ + QA+ LAP+RELA+QI VV +G + K +++ + +
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT-----AFGIKDSVPKGA 227
Query: 517 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 636
+ +V+GTPG V D++ RR L A IK+FVLDEAD ML
Sbjct: 228 KIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNML 267
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 119 bits (286), Expect = 4e-28
Identities = 67/158 (42%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 355 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI---RQLES 522
I+ E L+L TRELA QI+ +L + + GG N+++D+ +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 523 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 636
H+VV TPGR+ ++ + L N++K FVLDE D++L
Sbjct: 173 SPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLL 210
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 108 bits (260), Expect = 6e-25
Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 1/203 (0%)
Frame = +1
Query: 31 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 210
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 211 GIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALI 390
GF+ P+ IQQ AI + RDVI AQ+G+GKTA F++ ++Q++ + A++
Sbjct: 60 ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVV 119
Query: 391 LAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 570
LAPTRELA QI + A+G + + +GG ++ L HV+V TPGR+ D +
Sbjct: 120 LAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHL 179
Query: 571 -TRRALHANTIKLFVLDEADEML 636
+ +K ++DEAD +L
Sbjct: 180 ENTKGFSLKNLKYLIMDEADRLL 202
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 106 bits (254), Expect = 3e-24
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 355 IDTSI--RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 528
+ +++ +ALIL+P RELA Q KVV + + A +GG ++ E L
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKP 190
Query: 529 HVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 633
+VV TPGR + L ++I+ V DEAD +
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRL 225
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 104 bits (250), Expect = 9e-24
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Frame = +1
Query: 172 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 351
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 352 QI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 522
++ + + LIL PTRELA Q V + + CIGG +++ ++L
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 523 GVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEML 636
+V+ TPGR D M + I++ V+DEAD ML
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRML 418
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 103 bits (247), Expect = 2e-23
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Frame = +1
Query: 151 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 330
D + +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 331 FSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 486
F I ++ I + E A++LAPTRELAQQIQ + L +C + +GG
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
Query: 487 TNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 636
E Q+ G H+VV TPGR+ D + RR + V+DEAD ML
Sbjct: 363 HAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRML 412
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 101 bits (241), Expect = 1e-22
Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Frame = +1
Query: 169 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 348
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 349 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 528
++ ALIL PTRELA QI + ALG +LN K +GG ++ L
Sbjct: 67 EKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRP 126
Query: 529 HVVVGTPGRVYDMITRRALHA----NTIKLFVLDEADEMLS 639
HVVV TPGR+ D+I IK V+DEAD +LS
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLS 167
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 99 bits (238), Expect = 3e-22
Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Frame = +1
Query: 169 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 348
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 349 Q------QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 510
+ QID + R AL+L PTRELAQQ+ V+ L + TN + ++
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQ 133
Query: 511 Q--LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 639
+ L +V+ TP R + L + +K V+DEAD MLS
Sbjct: 134 RPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLS 178
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 98.3 bits (234), Expect = 8e-22
Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 345
V + +L E+L + GF KP IQ I G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 346 LQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 519
L+ + + QAL++APTRELA QI + + N + + GG V++ R L
Sbjct: 181 LEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 520 SGVHVVVGTPGRVYDMITRRALHAN--TIKLFVLDEADEML 636
HVVV TPGR++ +I L N IK VLDEAD +L
Sbjct: 241 KHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLL 281
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 96.3 bits (229), Expect = 3e-21
Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 5/162 (3%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---S 336
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++G+GKT F +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 337 ISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 513
I +L + R +I++PTRELA QI V L + + IGG N R + +
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADK 207
Query: 514 LESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEML 636
L GV+++V TPGR+ D + + ++ V+DEAD +L
Sbjct: 208 LVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRIL 249
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 93.1 bits (221), Expect = 3e-20
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 345
V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 346 LQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 510
+ I+ L+LAPTRELA QIQ+ G + GG IR
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 511 QLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 636
L GV + + TPGR+ DM+ + + VLDEAD ML
Sbjct: 241 DLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRML 282
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 90.2 bits (214), Expect = 2e-19
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Frame = +1
Query: 151 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 330
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 331 FSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 495
F + + + I ++ + A+I+ PTRELA QI + LN + GG +
Sbjct: 472 FLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPI 531
Query: 496 REDIRQLESGVHVVVGTPGRVYDMITR---RALHANTIKLFVLDEADEM 633
++ I L+ G +VV TPGR+ D+++ R + + VLDEAD M
Sbjct: 532 KDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRM 580
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 87.8 bits (208), Expect = 1e-18
Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 345
V F L LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 346 L--------------QQIDTSIRECQA----LILAPTRELAQQIQKVVIALGDHLNAKCH 471
L Q R +A LILAPTREL QI + +
Sbjct: 228 LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPC 287
Query: 472 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 636
A GG ++R IRQ++ G ++ TPGR+ D+I R + IK VLDEAD ML
Sbjct: 288 AVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRML 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 85.4 bits (202), Expect = 6e-18
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 355 ID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 525
++ + + L+++PTRELA Q + + +L N K GG E R ++
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNA 286
Query: 526 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 636
V++GTPGR+ D+I ++ + + VLDEAD ML
Sbjct: 287 -SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRML 322
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 79.4 bits (187), Expect = 4e-16
Identities = 47/164 (28%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Frame = +1
Query: 160 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 339
+ V+ F ++ L + + F + IQ++ I ++GRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 340 SILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 507
+++ + TS+ AL+++PTRELA Q + ++ +G + IGG N +E+
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEK 155
Query: 508 RQLESGVHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEML 636
+L S ++++V TPGR+ I + + +++ +LDEAD +L
Sbjct: 156 ERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRIL 198
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 74.9 bits (176), Expect = 9e-15
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 13/168 (7%)
Frame = +1
Query: 172 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 351
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 352 QI---DTSIRECQALILAPTRELAQQIQKVVIAL----------GDHLNAKCHACIGGTN 492
++ DT ALI+APTRELA QI V L G L A + GT
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 493 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 636
+ E VV+GTPGR+ +M++ + + +++ +LDEAD ++
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLI 167
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 73.3 bits (172), Expect = 3e-14
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Frame = +1
Query: 238 PSAIQQRAIMPCIQ--GRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 390
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 391 LAPTRELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 558
+APTREL QQI V L + H C+ IGG + + ++ GV++++GTPGR+
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRL 280
Query: 559 YDMI-TRRALHANTIKLFVLDEADEML 636
D + AL + ++ VLDE D ++
Sbjct: 281 ADHLENTEALDVSQVRWVVLDEGDRLM 307
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 66.5 bits (155), Expect = 3e-12
Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
Frame = +1
Query: 226 GFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 387
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 388 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGG-TNVREDIRQLESGVHVVVGTPGRVYD 564
IL+PTRELA QI + L + IGG + +RE+ ++++ TPGR+ D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 565 MITR-RALHANTIKLFVLDEADEML 636
+ R L + + F+LDEAD ++
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLM 201
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 61.3 bits (142), Expect = 1e-10
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Frame = +1
Query: 196 EELLRGIYAYGFEKPSAIQ----QRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQQID 360
EE GI +K + + QR +P I RD++A A +G+GKT + ILQ++
Sbjct: 50 EEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ 109
Query: 361 TSI-RECQALILAPTRELAQQIQKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGVHV 534
+ +A+I+APTREL +QI + L + K ++E +L +
Sbjct: 110 LHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDM 169
Query: 535 VVGTPGRVYDMITRRALHANTIKLFVLDEADEM 633
+GTP R+ I + L ++ FV+DEAD +
Sbjct: 170 CIGTPMRLVQAI-QTGLSFEKVEFFVMDEADRL 201
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 60.1 bits (139), Expect = 3e-10
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Frame = +1
Query: 193 KEELLRGIYAYGFEKPSAIQQRAIMPCIQ-GRDVIAQAQSGTGKTATFSISILQQID-TS 366
K+ + RG P +Q P G DV A +G+GKT ++ I I+Q + +
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 367 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL-----ESGVH 531
+ + +++ PTREL Q+ K + A G ++R + QL E +
Sbjct: 203 VPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRID 262
Query: 532 VVVGTPGRVYDMITR-RALHANTIKLFVLDEADEML 636
V+V TPGR+ D I + ++ V+DEAD +L
Sbjct: 263 VLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLL 298
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 44.0 bits (99), Expect = 2e-05
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 9/154 (5%)
Frame = +1
Query: 190 LKEELLRGIY-AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 366
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 367 IRECQALILAPTRELAQQIQKVVIALGDHL----NAKCHACIGGTNVREDIRQLESGVHV 534
+ A + PT+ LAQ +K +I + ++ N + G T + E + ++
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPL-ESRESIIRSANI 412
Query: 535 VVGTPGRVYDMITRRA----LHANTIKLFVLDEA 624
+ P ++ I A +KLFVLDEA
Sbjct: 413 IFTNPDMLHQTILPNANRWYYFFKNLKLFVLDEA 446
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 34.3 bits (75), Expect = 0.015
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Frame = +1
Query: 253 QRAIMPCIQGRD--VIAQAQSGTGKTATFSISILQQIDTSIRE--------CQALILAPT 402
Q + P G D ++ A +G GKT + IL ++ +RE + + +AP
Sbjct: 524 QSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPL 583
Query: 403 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA 582
+ L Q++ N + G + + +Q S ++V TP + +D+ITR+A
Sbjct: 584 KALVQEMVNNFSKRLTPYNIRVAELTGDSQL---TKQQISETQIIVTTPEK-WDIITRKA 639
Query: 583 ---LHANTIKLFVLDE 621
+ N ++L ++DE
Sbjct: 640 NDLSYVNLVRLVIIDE 655
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.32
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 466 CHACIGGTNVREDIRQLE-SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 633
C I G N R + +L S + ++ + + R + A+T K+ +LDEAD M
Sbjct: 76 CARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAM 132
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.43
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 142 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 288
LDT+W V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 139 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 231
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 310 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 426
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 342 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 443
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 421 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT-PGRVYDMITRRALHANT 597
++ + A+ DHL+ + CIG N+ ED VH + T G+ ++T H++
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED------SVHKISLTRSGKPSQLVTVSCRHSSV 187
Query: 598 IK 603
I+
Sbjct: 188 IQ 189
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 116 DLREWTLGHLTPT 154
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 456 QVITKSYHHLLNLLGQLSCGSQDQ 385
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +1
Query: 388 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 546
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -2
Query: 516 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 415
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 136 QGPFPEVHRNYLDPSMAHFWNPLANL 59
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.0
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 355 IDTSIRECQALILAPTR-ELAQQIQKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGV 528
+D IR+ A+ +P +LA + + D H +++ D+R +ESGV
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGV 404
Query: 529 HVVVGTPGRVYDMITR--RALHANTIKLFVLDEADEM 633
+ + T G YD + L+ + IK V E M
Sbjct: 405 NRFIATSG--YDGCVKLWNPLNCSLIKSMVGHEEKVM 439
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 145 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR 285
DTDWD +V + D++L+ RGI A G + + + P + +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSK 660
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,557
Number of Sequences: 5004
Number of extensions: 65816
Number of successful extensions: 247
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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