Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30k10
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    26   1.2  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   1.6  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   2.1  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   2.8  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   2.8  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   3.8  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    24   5.0  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    24   5.0  
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    24   5.0  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    24   6.6  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    24   6.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    23   8.7  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    23   8.7  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    23   8.7  

>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 235 DLHSSPLSAVFIFCMQLPVKSPVTTISRIFCLSGTALVHEV 113
           D+H SP   +   C++  +K  V  +  +  +SG A  H++
Sbjct: 153 DIHFSPTGLI---CLENTIKGAVVPLDEVARISGLAKAHKI 190


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -1

Query: 228 ILLHYQQSSFFACSYL*SHLLQPLVEYSASQELHWSMKFTKVTSA 94
           +++H+    F  C  + SHL           ++HW  KF ++ +A
Sbjct: 156 VVIHFYHPDFIRCKIIDSHL-------EKIAKVHWETKFIRIEAA 193


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -3

Query: 280 HHGILQ-PSHQHHQTKDLHSSPLSAVFIFCMQLPVKSPVTTISR 152
           HHG L  PSH+H  T     S   A  IF    P+  P    S+
Sbjct: 48  HHGFLSSPSHKHPTTASASDSD-EATEIFTHSQPLPIPAGPSSK 90


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 280 HHGILQPSHQHHQTKDLHSSP 218
           H G+L P HQH     + +SP
Sbjct: 16  HPGLLTPDHQHAAILSVQNSP 36


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 50  LWIFYSFLPP*ILRIAEVTLVN 115
           L +FY+F+PP       VTL+N
Sbjct: 277 LLVFYTFIPPRFTIQTSVTLIN 298


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 244 QTKDLHSSPLSAVFIFCMQLPVKSPVTTISRIFCLSGTALVHEVYQSDFSYSQNS 80
           + K  + +P  A  +F  +L V  P+T I+ I  L GT+ +    Q+  S   +S
Sbjct: 97  ENKSSNQNPSKANNLFD-KLGVSKPITFIACILQLGGTSFMESELQTKLSTINSS 150


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 88  QNSRG*KTIENPQ*TN*ASNHADHFQF 8
           ++S+G   IENP   N + NH+D+  F
Sbjct: 31  RDSQGQLGIENPPKCNNSGNHSDNLGF 57


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 320 FFFPYSLFYYKTLAS 276
           FF+PYS FY+  L+S
Sbjct: 612 FFWPYSQFYFCILSS 626


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 265 QPSHQHHQTKDLHSSPLSAVFIFCMQLPVKSPVTTISRIFCL 140
           QPS      K + + PL +  I C     K P T +S + CL
Sbjct: 393 QPSAVVLNRKTVITEPLLSSEISCRFADEKKPGTNVSDLICL 434


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 204 KTADNGEECKSFV 242
           K A+NG +C+SFV
Sbjct: 238 KVAENGADCRSFV 250


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 317 FFPYSLFYYKTLASRYP 267
           FFPYSL  +K L   YP
Sbjct: 317 FFPYSLIGHKELRFVYP 333


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -3

Query: 277 HGILQPSHQHHQTKDLHSSPLSAVFIFCMQLPVKSP--VTTISR 152
           H    P   HH++      P+S  F+    +P K+P   T I+R
Sbjct: 437 HSYGSPKSLHHKSSSAGERPVSPTFV--ADIPPKTPWGTTLINR 478


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 304 HCFI--TKL*HHGILQPSHQHHQTKDLHS 224
           HC I  T+   HGI  P + H Q  D HS
Sbjct: 80  HCAISHTRWATHGIPSPINCHPQRSDPHS 108


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 320 FFFPYSLFYYKTLAS 276
           FF+PY+ F++ TL S
Sbjct: 537 FFWPYAGFHFSTLVS 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,375,188
Number of Sequences: 5004
Number of extensions: 25437
Number of successful extensions: 57
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)