Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30k10
         (321 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0229 + 2425090-2425819,2426602-2426720                           27   2.5  
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342...    27   3.3  
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026...    26   5.7  

>10_01_0229 + 2425090-2425819,2426602-2426720
          Length = 282

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 317 FFPYSLFYYKTLASRYPPAQSSASSNKRLAFFSIISSLHFLHAATCEVTCY 165
           ++P+S FY K  A   PP     S   ++ F   +  +    +   E++CY
Sbjct: 234 YYPFSSFYTKEAAELLPPC--DMSKKPKVPFAGALPDIEEYGSNIGEISCY 282


>08_01_0387 -
           3426058-3426168,3426279-3426473,3426612-3426724,
           3427121-3427157,3427270-3427341,3427849-3427962,
           3428129-3428200,3428343-3428381,3429340-3429414,
           3429561-3429674,3429749-3429813,3429927-3430047,
           3430942-3431063,3431547-3431634
          Length = 445

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 214 IMEKNASLLFDDADDWAGGYR 276
           +++K  S  FDDADD  G YR
Sbjct: 369 LLDKKTSSEFDDADDEVGRYR 389


>04_04_1392 +
           33201015-33201600,33202030-33202406,33202528-33202638,
           33202720-33202815,33202899-33203570
          Length = 613

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 280 HHGILQPSHQHHQ 242
           HH +L PSH HH+
Sbjct: 13  HHRVLLPSHHHHR 25


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,436,775
Number of Sequences: 37544
Number of extensions: 151662
Number of successful extensions: 317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)