Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30k10
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006642-3|AAF39832.2|  410|Caenorhabditis elegans Acyltransfera...    29   0.56 
AC006642-2|AAF39831.1|  617|Caenorhabditis elegans Acyltransfera...    29   0.56 
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical p...    25   9.2  
Z78410-1|CAB01638.2|  330|Caenorhabditis elegans Hypothetical pr...    25   9.2  
U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic letha...    25   9.2  
U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic letha...    25   9.2  
AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.     25   9.2  
AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.     25   9.2  
AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical...    25   9.2  

>AC006642-3|AAF39832.2|  410|Caenorhabditis elegans
           Acyltransferase-like protein 4,isoform b protein.
          Length = 410

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 217 LSAVFIFCMQLPVKSPVTTISRIFCLSGTALV 122
           L  +F +C+ LP++  V  I  +F +S TAL+
Sbjct: 45  LGFMFRYCVMLPLRFTVFCIGLVFLISSTALI 76


>AC006642-2|AAF39831.1|  617|Caenorhabditis elegans
           Acyltransferase-like protein 4,isoform a protein.
          Length = 617

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 217 LSAVFIFCMQLPVKSPVTTISRIFCLSGTALV 122
           L  +F +C+ LP++  V  I  +F +S TAL+
Sbjct: 255 LGFMFRYCVMLPLRFTVFCIGLVFLISSTALI 286


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 92  FSKFTGVKNYRKSTINQLSFEPCRSLSILK 3
           F  FTG  NY    ++ L++ P  SL++LK
Sbjct: 240 FFDFTGHSNYATLFLDVLTYFPTNSLTLLK 269


>Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical
           protein T13F2.5 protein.
          Length = 368

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 7   KIESDRHGSKLNWFIVDF 60
           ++ SD H S +NW ++ F
Sbjct: 262 RMSSDEHDSSMNWILIGF 279


>Z78410-1|CAB01638.2|  330|Caenorhabditis elegans Hypothetical
           protein C51E3.1 protein.
          Length = 330

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 235 DLHSSPLSAVFIFCMQLPVKSPVTTISRIFCLSGTALVH 119
           DL+  PL+  FIFC  + V   +  +  I C S T  +H
Sbjct: 6   DLNLLPLAIFFIFCSTIGV---IGNLIMIICCSVTKRLH 41


>U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform b protein.
          Length = 158

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 229 HSSPLSAVFIFCMQLPVKSPVTTISRIFC 143
           HS+  +  F+FC ++P      T+ +  C
Sbjct: 54  HSASFNTRFVFCCRIPCDQTSGTLEKCLC 82


>U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform a protein.
          Length = 305

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 229 HSSPLSAVFIFCMQLPVKSPVTTISRIFC 143
           HS+  +  F+FC ++P      T+ +  C
Sbjct: 54  HSASFNTRFVFCCRIPCDQTSGTLEKCLC 82


>AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.
          Length = 158

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 229 HSSPLSAVFIFCMQLPVKSPVTTISRIFC 143
           HS+  +  F+FC ++P      T+ +  C
Sbjct: 54  HSASFNTRFVFCCRIPCDQTSGTLEKCLC 82


>AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.
          Length = 305

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 229 HSSPLSAVFIFCMQLPVKSPVTTISRIFC 143
           HS+  +  F+FC ++P      T+ +  C
Sbjct: 54  HSASFNTRFVFCCRIPCDQTSGTLEKCLC 82


>AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.3 protein.
          Length = 998

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 320 FFFPYSLFYYKTLASRYPPAQSSASSNKRLAF 225
           FF P  +F+     + Y P Q    SNK++ +
Sbjct: 610 FFAPTKVFFLNEATALYGPFQIPMPSNKKIVY 641


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,600,046
Number of Sequences: 27780
Number of extensions: 145181
Number of successful extensions: 342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)