Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30k10
         (321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.30 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   4.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   4.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -3

Query: 310 HIHCFITKL*HHGILQPSHQHHQTKDLHSSPLSAVFI 200
           H H   T   HH      H  H T   HSS  +A+ I
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQI 459


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 181 VKSPVTTISRIFCLSGTALVHEVYQ 107
           VK+P+  I   + +SG    +E Y+
Sbjct: 25  VKTPLGAIKGYYKISGNGKQYEAYE 49


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 181 VKSPVTTISRIFCLSGTALVHEVYQ 107
           VK+P+  I   + +SG    +E Y+
Sbjct: 25  VKTPLGAIKGYYKISGNGKQYEAYE 49


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 256 HQHHQTKDL 230
           H HHQT+ L
Sbjct: 353 HHHHQTQSL 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,576
Number of Sequences: 438
Number of extensions: 1774
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)