Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30k09
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    25   3.3  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      27   6.2  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    27   6.2  
Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z74473-4|CAA98953.1|  390|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 24.6 bits (51), Expect(2) = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 380 RHGHHHRH 403
           RHGHHH H
Sbjct: 412 RHGHHHHH 419



 Score = 22.2 bits (45), Expect(2) = 3.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +2

Query: 383 HGHHHRHKC 409
           H HHH H C
Sbjct: 415 HHHHHHHGC 423


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 124 MKRLVINVRDPSLRQSLYNTIAYIERLLNI 35
           M+RL  N  DP   QS YN + Y  R  N+
Sbjct: 140 MERLPDNRHDPHQNQSNYNMLQYFSRKYNL 169


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
           protein C05C12.3 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 256 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 113
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 323 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 369


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 256 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 113
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 323 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 369


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1681

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 256 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 113
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 310 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 356


>Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical
           protein C33G3.4 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 393 WWP*RIVNMNLYNLIYSIIGTIKLMHINFLNASILR 286
           WWP  +    LY+++ S+ G +K   I F    +++
Sbjct: 297 WWPNGMGEQKLYDVVVSMGGQVKEKKIGFKTVELVQ 332


>Z74473-4|CAA98953.1|  390|Caenorhabditis elegans Hypothetical
           protein F56H9.4 protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 349 LFNNRNNKIDAHQFFERVDTAEAQIIKDSIYD 254
           L NN+N KI  H      DTA  Q++ D ++D
Sbjct: 348 LNNNKNRKIYQH-VTSATDTARIQVVIDMLFD 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,509,769
Number of Sequences: 27780
Number of extensions: 227456
Number of successful extensions: 799
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)