Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30k07
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   172   2e-43
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    31   0.78 
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    29   3.1  
Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    27   9.5  
AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical...    27   9.5  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  172 bits (418), Expect = 2e-43
 Identities = 80/149 (53%), Positives = 109/149 (73%)
 Frame = +2

Query: 131 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 310
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 311 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 490
            +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK RK LQ+ RLRQINNGVFV+LNK
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123

Query: 491 ATVNMLRIAEPYIAWGYPNLKSVRELVYK 577
           AT+ +LRI EPY+AWGYPN K++ +L+YK
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTIHDLLYK 152


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +3

Query: 243 RRRGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKF 413
           ++R K SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRY 77


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 541 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNF 428
           ++PS  RL    H H+ L Q +++ I    Q K++Q F
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFF 533


>Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical
           protein T08G3.8 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -2

Query: 291 YSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPLT 112
           YS+     L+K+S +FL  + + +S   + ++ R  ++++ ++        FL+   PLT
Sbjct: 24  YSMPTVYILIKLSYYFLYRKNKCYSTDLHPVLFRQFMIMQ-IACFFNVCIKFLIFRIPLT 82

Query: 111 G 109
           G
Sbjct: 83  G 83


>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 233 SAIKKKREIFKRAEQYVKEYRIKERDEI 316
           S+I++K E  ++ +Q  KEYR+K   E+
Sbjct: 65  SSIEQKTEGSEKKQQLAKEYRVKVEQEL 92


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 233 SAIKKKREIFKRAEQYVKEYRIKERDEI 316
           S+I++K E  ++ +Q  KEYR+K   E+
Sbjct: 65  SSIEQKTEGSEKKQQLAKEYRVKVEQEL 92


>AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical
           protein Y39B6A.29 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 222 FSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSF 121
           F  TC+ L  ++ L L  L T  GT+ SF LS F
Sbjct: 238 FKQTCSALTSKSMLQLFPLFTVLGTSSSFWLSIF 271


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/108 (17%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
 Frame = +2

Query: 212 VTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL-AFVI 388
           ++LK     +KK  E      Q+VKE    E + ++   ++ N+ ++Y+   + + A  +
Sbjct: 1   MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSIDAMWL 60

Query: 389 RIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 532
             +G  ++  ++  V+ +  L+ ++  V             + +P +A
Sbjct: 61  LTKGTMELMAEIH-VMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVA 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,955,359
Number of Sequences: 27780
Number of extensions: 226300
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)