Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30j21
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0134 + 7082462-7082627,7084199-7084325,7084404-7084611,708... 30 0.72
01_06_1774 + 39803747-39803825,39805338-39805555,39805856-398064... 29 1.3
11_01_0089 + 670597-672210 29 1.7
04_04_1550 - 34332948-34335986 27 3.8
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377... 27 3.8
07_03_1568 - 27788314-27788619,27789125-27789294,27789868-277899... 27 6.7
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 27 6.7
01_06_0893 - 32766994-32768841,32769596-32769782,32769860-327699... 27 6.7
09_04_0667 - 19323771-19323858,19324022-19324076,19324582-19325185 26 8.9
06_02_0268 + 13597921-13598373 26 8.9
04_03_0504 + 16616026-16616137,16616613-16616768,16616884-166170... 26 8.9
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 26 8.9
>02_02_0134 +
7082462-7082627,7084199-7084325,7084404-7084611,
7084864-7084990,7085071-7085255,7085332-7085454,
7085777-7085836,7085980-7086117
Length = 377
Score = 29.9 bits (64), Expect = 0.72
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 161 LY*IFVSGGLVIYFYERIIAFGPIDHRR 78
LY IF GL YFYE + + P +HR+
Sbjct: 213 LYGIFPYSGLKFYFYETMKTYVPEEHRK 240
>01_06_1774 +
39803747-39803825,39805338-39805555,39805856-39806436,
39807239-39808136
Length = 591
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 126 NYEATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFF 239
NY +TA N+++ D H SW N ++G + Y F+
Sbjct: 500 NYLSTALANIMRKVTTRDGHSSWLTDNINLGKLDYYFY 537
>11_01_0089 + 670597-672210
Length = 537
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -1
Query: 141 RWPRNLFLRAHNCVRP-NRSPACRESRWKRRPPTT 40
RWPR LFL RP R+ C R PPTT
Sbjct: 51 RWPRGLFLSPLTKPRPTRRAHQCVPHPRPRLPPTT 85
>04_04_1550 - 34332948-34335986
Length = 1012
Score = 27.5 bits (58), Expect = 3.8
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 24 KLLNVLWLVV-AVSNAIPGTPVIDWAERNYALVKINYEATAYENLIKLKEQVDVHVSWNV 200
KLLN L+L ++ ++P + A R +L + + ++L L E + +S+N+
Sbjct: 195 KLLNDLFLDGNGLTGSLPKDLYMMPALRKLSLQENKLSGSLDDDLGNLTEITQIDLSYNM 254
Query: 201 WNGDIGDI 224
+NG+I D+
Sbjct: 255 FNGNIPDV 262
>04_03_0306 +
14136338-14136686,14137408-14137442,14137701-14137778,
14138046-14138124,14138731-14138823,14139472-14139556,
14140270-14140345,14140669-14140794,14141039-14141137,
14141238-14141339,14141561-14141671,14141809-14141904,
14142488-14142539,14142624-14142735,14142879-14142943,
14144124-14144521,14145236-14145330,14145989-14146015,
14146081-14146156,14146368-14146421,14146741-14146863,
14146955-14147023
Length = 799
Score = 27.5 bits (58), Expect = 3.8
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Frame = +3
Query: 72 PGTPVIDWAERNYALVK---INYEATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFFD 242
P T DW ++ + EA E +KEQ + +N+W D G + + FD
Sbjct: 278 PRTTFADWNTSLQTIITWSPYSTEAELLEQFSSIKEQGTRIIIYNLWEDDEGHLE-LDFD 336
Query: 243 EQ----QVWKGDADSKRATINVIVSGQF 314
E Q+ G+ D K N++++ QF
Sbjct: 337 EDIHDIQLRGGNRDEK----NILMAKQF 360
>07_03_1568 -
27788314-27788619,27789125-27789294,27789868-27789979,
27790063-27790117,27790201-27790316,27790731-27790812,
27790974-27791228,27791326-27791454,27791539-27791747
Length = 477
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 144 KRWPRNLFLRAHNCVRPNRSPACRESRWKRR 52
+R +LR H V P R P C E WK R
Sbjct: 179 QRLEAGTYLRVH--VHPKRFPRCYEIDWKSR 207
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 343 SSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSS 239
SSL L +L CP+ M +L HT CS+
Sbjct: 49 SSLTGLNDLLECPVCTNSMRPPILQCPNGHTICSN 83
>01_06_0893 - 32766994-32768841,32769596-32769782,32769860-32769987,
32770080-32770283,32770373-32770523,32771424-32771533,
32772534-32772903,32773031-32773189,32773719-32773848,
32773921-32773989,32774066-32774154,32774319-32774439,
32775878-32776148
Length = 1278
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 189 SWNVWNGDIGDIAYVFFDE---QQVWKGDADSK 278
+WN W GD Y++ D+ Q+ KGDA ++
Sbjct: 1048 NWNPWKGDSNANKYMWKDDSPYHQMTKGDAHTQ 1080
>09_04_0667 - 19323771-19323858,19324022-19324076,19324582-19325185
Length = 248
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 343 SSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSSKNTYAMSPM 212
+S+Q+L +L+ + + L A+P CC S N SP+
Sbjct: 174 TSVQALDELLHNDIANGVRADRLPEATPDSPCCESSNGIKTSPL 217
>06_02_0268 + 13597921-13598373
Length = 150
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +3
Query: 42 WLVVAVSNAIPGTPVIDWAERNYALVKINYEATAYENLIKLKEQVDVHV 188
W A+++ G + DW+E +++ +A + L + KE++ +H+
Sbjct: 95 WKAGAMASPTAGIRLTDWSEATGEVLQRQEKALSKRRLPENKEKLSLHI 143
>04_03_0504 +
16616026-16616137,16616613-16616768,16616884-16617045,
16618152-16618480
Length = 252
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 383 AILTNTGIAYGTAVLIAKFDTHVKLPAHNNIN 288
A ++NT A G+ ++ D HV A+NN+N
Sbjct: 175 AKISNTAAAEGSDEKVSSGDGHVVPKAYNNVN 206
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 137 GLVIYFYERIIAFGPIDHRRAGNRVGNGDH 48
G V+Y+ RI F + ++ G R G DH
Sbjct: 2227 GTVLYYLVRIEPFTALSIQQQGGRFGQDDH 2256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,923,348
Number of Sequences: 37544
Number of extensions: 210022
Number of successful extensions: 597
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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