Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30j16
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical pr...    31   0.61 
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical...    28   4.3  
AF016427-11|AAB65354.2|  108|Caenorhabditis elegans Hypothetical...    28   5.7  
Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    27   9.9  
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.      27   9.9  
AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine re...    27   9.9  
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w...    27   9.9  

>Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical
           protein F32B4.6 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +2

Query: 275 RFPHIDNNSNM--ATKRFFSGESSGEPLIKRMAMANSPKKIRENYKRINGKLMGKMTLSI 448
           RFPH D+ S+M  A   F +  S G PLI    +  + +   +  K ++ +L G M  ++
Sbjct: 11  RFPHSDSTSSMMLANLTFGNMRSKGTPLILVPGLFGTKENWIQVGKDLSQRL-GCMVFAV 69

Query: 449 DNEYYYTFRIMSDNKIQEYYGDSQSFKD 532
           +N  + +F   +    +E   D   F D
Sbjct: 70  ENRNHGSFSKAASMTYEEMADDLVGFID 97


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 443 SIDNEYYYTFRIMSDNKIQEYYGDSQSFKDMEEGKCYDISLNYVK 577
           S D +  Y   I + N IQ +Y    SFK+  + K + + + Y+K
Sbjct: 292 SFDEKLKYIVGINNFNMIQNFYSHPCSFKNFAQEKDFLLGIGYLK 336


>AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical
           protein ZK250.2 protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 186 PTTHRLTTRLEQCFKKPILKISTTIHRLC 100
           PTTH  T   E+    P++++ST   ++C
Sbjct: 54  PTTHAETGMTEEMMTTPVVEVSTVTEKVC 82


>AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical
           protein C38C3.7 protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = -3

Query: 211 WRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKT-LTMYNERI--RAALN 41
           W  +I+++ N+ P      T+F++  FE+ +     +++++  T  T+ N +I  R AL+
Sbjct: 311 WISIIVSIDNSEPPSPQKFTVFKRMGFEDCETVEDFIWHVENSTKKTVKNAKIERRLALH 370

Query: 40  RPAR-FND 20
           + +R F D
Sbjct: 371 KVSRKFKD 378


>AF016427-11|AAB65354.2|  108|Caenorhabditis elegans Hypothetical
           protein F32D1.8 protein.
          Length = 108

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +2

Query: 308 ATKRFFSGESSGEPLIKRMAMANSPKKIRENYKRINGKLMGKMTLSIDNEYYYTFRIMSD 487
           A++ F   E S EP++K         +  E+Y RI  +L+ ++   I      T    SD
Sbjct: 31  ASEYFSVSEISEEPMLKEPFDEQHDDEYWEHYARIRQELLSRVLFPIRRG--KTLEEQSD 88

Query: 488 NKIQEYYGDSQSF 526
           +  +E+  DS  F
Sbjct: 89  SDEEEWSDDSWEF 101


>Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical
           protein F18E2.2 protein.
          Length = 622

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 125 FRLQYTDCVQFKNKNFNNVQRENKSCSQQTRSI*RSNDQ 9
           F+ QY   +Q   KNF+  Q++ K+  ++ +S  ++ +Q
Sbjct: 312 FKKQYAQDMQVHEKNFDQQQKQLKAMKKEGKSAKQAEEQ 350


>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
 Frame = +2

Query: 419 KLMGKMTLSIDNEYYYTFRIMSDNKIQEYY-----GD-SQSFKDMEEGKCYDISLN 568
           + M +M LS  N   Y F+ M+++++Q+Y+     GD + S  D E+    DIS N
Sbjct: 119 RAMKEMELSQRNRDRYKFQNMTEDEVQKYFENKYKGDKNDSQYDDEDSAMDDISKN 174


>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
 Frame = +2

Query: 419 KLMGKMTLSIDNEYYYTFRIMSDNKIQEYY-----GD-SQSFKDMEEGKCYDISLN 568
           + M +M LS  N   Y F+ M+++++Q+Y+     GD + S  D E+    DIS N
Sbjct: 119 RAMKEMELSQRNRDRYKFQNMTEDEVQKYFENKYKGDKNDSQYDDEDSAMDDISKN 174


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical
           protein E03G2.2 protein.
          Length = 1503

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 301 AVVVNMWESIRWQILNGDEIE 239
           +V+V +W+ ++W+IL G  I+
Sbjct: 299 SVIVTLWQIMKWEILGGSFIK 319


>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
          Length = 1142

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = +2

Query: 389  IRENYKRINGKLMGKMTLSIDNEYYYTFRIMSDNKIQEYY-------GDSQSFKDMEEGK 547
            +RE + + +GK+  +  LS  + YYY  +   D ++ E         G++Q+  D++   
Sbjct: 799  LREFFMKGSGKIKMRYFLSYFHRYYYIKKDAWDQEVAEQQPNSGGETGENQNPLDVQTSF 858

Query: 548  CYDISLNYVK 577
             Y++ L Y +
Sbjct: 859  PYEVELAYTE 868


>AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 7 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 104 NRCIVVEIFKIGFLKHCSKRVVKRCVVGHIY 196
           N  I+ ++   GF  HCS R+V   +  H Y
Sbjct: 57  NVIIIFQVHWFGFFLHCSNRIVLHTIDLHNY 87


>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 3 protein.
          Length = 1142

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = +2

Query: 389  IRENYKRINGKLMGKMTLSIDNEYYYTFRIMSDNKIQEYY-------GDSQSFKDMEEGK 547
            +RE + + +GK+  +  LS  + YYY  +   D ++ E         G++Q+  D++   
Sbjct: 799  LREFFMKGSGKIKMRYFLSYFHRYYYIKKDAWDQEVAEQQPNSGGETGENQNPLDVQTSF 858

Query: 548  CYDISLNYVK 577
             Y++ L Y +
Sbjct: 859  PYEVELAYTE 868


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,317,767
Number of Sequences: 27780
Number of extensions: 295612
Number of successful extensions: 894
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)