Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30j07
         (590 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X95191-1|CAA64490.1|  290|Homo sapiens delta-sarcoglycan protein.      31   4.0  
BX537948-1|CAD97916.1|  289|Homo sapiens hypothetical protein pr...    31   4.0  
BC020740-1|AAH20740.1|  290|Homo sapiens sarcoglycan, delta (35k...    31   4.0  
AY273815-1|AAQ16156.1| 2623|Homo sapiens bone specific CMF608 pr...    29   9.3  

>X95191-1|CAA64490.1|  290|Homo sapiens delta-sarcoglycan protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 90  FEAVVCENGGLFVLTGGAAVTCHID 164
           FE  VC NG LF+   GA  TC I+
Sbjct: 261 FEICVCANGRLFLSQAGAGSTCQIN 285


>BX537948-1|CAD97916.1|  289|Homo sapiens hypothetical protein
           protein.
          Length = 289

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 90  FEAVVCENGGLFVLTGGAAVTCHID 164
           FE  VC NG LF+   GA  TC I+
Sbjct: 260 FEICVCANGRLFLSQAGAGSTCQIN 284


>BC020740-1|AAH20740.1|  290|Homo sapiens sarcoglycan, delta (35kDa
           dystrophin-associated glycoprotein) protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 90  FEAVVCENGGLFVLTGGAAVTCHID 164
           FE  VC NG LF+   GA  TC I+
Sbjct: 261 FEICVCANGRLFLSQAGAGSTCQIN 285


>AY273815-1|AAQ16156.1| 2623|Homo sapiens bone specific CMF608
           protein.
          Length = 2623

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 204 DYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQ-NGAY 362
           D  G    +M  +  T +  C+  +Y + D+LT +I +  PLV  + YQ NG +
Sbjct: 531 DKSGKLELQMADSFDTGVYHCISSNYDDADILTYRITVVEPLV--EAYQENGIH 582


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,944,664
Number of Sequences: 237096
Number of extensions: 1504751
Number of successful extensions: 3137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3137
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)