Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30j05
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    30   0.88 
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenase...    27   6.2  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +2

Query: 188 TETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNI--NYILNVMPVMQDERKMS 361
           T +   CK +K    L S    + N+D  I  V+F +KK I   +  +V+    DE    
Sbjct: 33  TLSLGTCKQQKKKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEEHDEYSAF 92

Query: 362 KRKKKVINNNKYILFN 409
           K   +   + +Y++ N
Sbjct: 93  KEAYEEEESREYVIEN 108


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/80 (27%), Positives = 40/80 (50%)
 Frame = +2

Query: 149 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNV 328
           K N+    EQ   TE  A+ +N+KLL  L   + ++  MDQ +   N ++K  + + L  
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELT- 178

Query: 329 MPVMQDERKMSKRKKKVINN 388
               Q+  K  K++++ I +
Sbjct: 179 --SCQNRFKQMKQERRHIED 196


>AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical
           protein Y104H12D.2 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 197 AAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 316
           AA  KNE LL+ L+  SYN++   Q++ I     K N NY
Sbjct: 34  AARTKNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 451 AXRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 326
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 320  LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPXSPAMWDLVKNT 481
            ++++P M    K S  K++     +Y   +  ++ +K KQ E    P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
           protein F48F5.1 protein.
          Length = 1291

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 227 NKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNK 394
           N LE+    KSNM +++   N  EK  +   L       + RK++++KK   N  +
Sbjct: 818 NALEAKIKEKSNMRKVVDEQNQREKDELQAKLRADQEKSEARKIAEKKKDEQNQKE 873


>AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenases,
           short chain protein9 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/66 (21%), Positives = 31/66 (46%)
 Frame = +2

Query: 281 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPXSPAM 460
           I  F++ +N+  + N   V++ E +    +  ++ NN Y    +    + +P +   P +
Sbjct: 67  IARFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPYV 123

Query: 461 WDLVKN 478
           WD + N
Sbjct: 124 WDTINN 129


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 26/88 (29%), Positives = 36/88 (40%)
 Frame = +2

Query: 146  QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILN 325
            +KS  V + ++    E       EKLL K          M+Q   I N LE+K       
Sbjct: 868  EKSEKVKVQKELEEVEKQG---REKLLEKEREFRKTMEEMEQNEEIFNVLERKYNEQHKK 924

Query: 326  VMPVMQDERKMSKRKKKVINNNKYILFN 409
            VM  M D  +  +RK + +N  K  L N
Sbjct: 925  VMK-MNDVLREYERKIEQLNMEKTDLEN 951


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,575,221
Number of Sequences: 27780
Number of extensions: 269879
Number of successful extensions: 764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)