Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30j04
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   2.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   2.7  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    24   6.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    24   6.2  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.2  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    24   8.2  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    24   8.2  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    24   8.2  

>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 126 SDGDHDGYLELTAAAKIMSPFISNGGSTVWTNAAP-SHKLIKNNKNYIQ 269
           SDG       LTA++   SP +S   ++   N  P S K + +N + +Q
Sbjct: 170 SDGSSSKSASLTASSAAASPTVSFSPASTSENLTPTSSKSLASNTSLVQ 218


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 17/70 (24%), Positives = 26/70 (37%)
 Frame = +3

Query: 30  NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGST 209
           N    T A +T+  +N   + + N      TN+           A A   + +  N  +T
Sbjct: 63  NNNNNTSAANTNAAYNANTAANANANTATTTNAAATTSAAYNPNAPANTNAAYYPNAAAT 122

Query: 210 VWTNAAPSHK 239
             TNA  S K
Sbjct: 123 TTTNADGSDK 132


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 241 NLCDGAALVHTVEPPLL 191
           ++CD  A +H ++PPL+
Sbjct: 168 DVCDAVAAMHYLDPPLI 184


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 140 RWLFGTNRRRQNHVTFY 190
           RWLF + +RRQ + + Y
Sbjct: 329 RWLFSSGKRRQKYESSY 345


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 39  MKTDAQSTSNTHNFMYSPDNNLEVV 113
           M     ST+N+ +F+ SP NN +++
Sbjct: 451 MSLQLPSTANSISFLSSPPNNNDII 475


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 119 NDDHLQIVVGRIHEVVRVRCRLGVRFHN 36
           N DH+ +V G    + R++  L  +FHN
Sbjct: 435 NADHIILVHGEQTNMGRLKSALASKFHN 462


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 85  ILPTTIWRWSSLPIRTAITMAIWN*PPPPKSCHLLLATAVRPC 213
           +L T ++   + P   +++   W  PPP  S +   A  +R C
Sbjct: 12  LLATAVYGQVASPELHSLSRRNWKKPPPFPSTNASYAPVIRSC 54


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 90   PDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGSTVWTNAAPSHKLIKNNKN 260
            P + +EV+ +   +G    +    A   +M  FISN G+ + T      K  K  K+
Sbjct: 895  PWHIIEVLSLKKINGAASIHAAQHALLSLMPIFISNSGNDIRTECKAGEKEYKEAKS 951


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,318,907
Number of Sequences: 5004
Number of extensions: 24339
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)