Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30j04
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0988 - 33340477-33340953                                         27   3.4  
06_01_0169 - 1346281-1349188,1350069-1350184                           27   4.4  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    27   5.9  
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238     26   7.7  
01_06_1233 - 35594510-35594687,35594985-35595100,35595364-355954...    26   7.7  

>02_05_0988 - 33340477-33340953
          Length = 158

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/17 (76%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +1

Query: 181 HLLLATAVRPCG-PTRR 228
           HLLL TA RPCG P RR
Sbjct: 13  HLLLPTASRPCGAPPRR 29


>06_01_0169 - 1346281-1349188,1350069-1350184
          Length = 1007

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 12  LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVII 119
           +  C  + IM+    S S   NF+YS  +N+  VI+
Sbjct: 493 VKSCRVHDIMRDIIVSISKEENFVYSTGDNVSTVIV 528


>01_03_0303 +
           14792842-14792949,14793659-14793760,14794657-14794800,
           14794906-14794986,14795078-14795147,14795267-14795337,
           14795427-14795594,14796030-14796074,14796449-14796511,
           14796594-14796869,14797858-14797971,14798099-14798225,
           14798315-14798484,14798743-14798841,14799577-14799630,
           14801487-14801522,14801741-14801844,14801952-14802186,
           14802377-14802609,14802846-14803346,14803422-14803716,
           14805796-14805881,14806952-14807064,14807303-14807385,
           14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 99  NLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGSTVWTNAAPSHKLIKNN 254
           NL V +I    G H+ +   +  A +++  +   G  +W    PS   + NN
Sbjct: 90  NLTVNLIPEVVGPHEEWALKSQTAALVAEVVRREGVALWNTLLPSIVSLSNN 141


>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
          Length = 697

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 160 PPPPKSCHLLLATAVRPCGPTRRHRTN 240
           PPPP       A A RPC P+    T+
Sbjct: 21  PPPPPPAKAAAAEAERPCPPSSAATTS 47


>01_06_1233 -
           35594510-35594687,35594985-35595100,35595364-35595463,
           35595536-35595603,35596940-35597071
          Length = 197

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +3

Query: 33  GIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNG 200
           G+MK +A  TS     +    N     I+ N    +  YL+L    + M  F S G
Sbjct: 93  GVMKNEAMGTSQGSTVLCYHYNFCHFYILENLSNRYSPYLQLMCWGRYMHYFQSFG 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,544,629
Number of Sequences: 37544
Number of extensions: 198693
Number of successful extensions: 561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)