Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30j04
         (361 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126466-1|AAI26467.1| 1770|Homo sapiens Nedd4 binding protein 2...    30   1.9  
AY267013-1|AAP22172.1| 1770|Homo sapiens BCL-3 binding protein p...    30   1.9  
AK001542-1|BAA91748.1|  659|Homo sapiens protein ( Homo sapiens ...    30   1.9  
AK123491-1|BAC85627.1|  134|Homo sapiens protein ( Homo sapiens ...    28   7.6  

>BC126466-1|AAI26467.1| 1770|Homo sapiens Nedd4 binding protein 2
           protein.
          Length = 1770

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = +3

Query: 12  LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNL--EVVIITNSDGDHDGYLELTAAAKIMSP 185
           L    +N   K ++      ++F+ S D N   +     N D  +   +  T    +   
Sbjct: 142 LDSLIQNAFEKLNSSPDDQVYSFLPSQDVNSFNDSSEFINPDSSNMTPIFSTQNMNLNGE 201

Query: 186 FISNGGSTVWTNAAPSHKLIKNNKNYIQ 269
            + N GST+  N  PSH ++  +K +I+
Sbjct: 202 NLENSGSTLSLNPLPSHSVLNESKCFIK 229


>AY267013-1|AAP22172.1| 1770|Homo sapiens BCL-3 binding protein
           protein.
          Length = 1770

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = +3

Query: 12  LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNL--EVVIITNSDGDHDGYLELTAAAKIMSP 185
           L    +N   K ++      ++F+ S D N   +     N D  +   +  T    +   
Sbjct: 142 LDSLIQNAFEKLNSSPDDQVYSFLPSQDVNSFNDSSEFINPDSSNMTPIFSTQNMNLNGE 201

Query: 186 FISNGGSTVWTNAAPSHKLIKNNKNYIQ 269
            + N GST+  N  PSH ++  +K +I+
Sbjct: 202 NLENSGSTLSLNPLPSHSVLNESKCFIK 229


>AK001542-1|BAA91748.1|  659|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10680 fis, clone NT2RP2006573, weakly similar to
           2',3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE (EC
           3.1.4.37). ).
          Length = 659

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = +3

Query: 12  LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNL--EVVIITNSDGDHDGYLELTAAAKIMSP 185
           L    +N   K ++      ++F+ S D N   +     N D  +   +  T    +   
Sbjct: 142 LDSLIQNAFEKLNSSPDDQVYSFLPSQDVNSFNDSSEFINPDSSNMTPIFSTQNMNLNGE 201

Query: 186 FISNGGSTVWTNAAPSHKLIKNNKNYIQ 269
            + N GST+  N  PSH ++  +K +I+
Sbjct: 202 NLENSGSTLSLNPLPSHSVLNESKCFIK 229


>AK123491-1|BAC85627.1|  134|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41497 fis, clone BRTHA2006075. ).
          Length = 134

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 82  CILPTTIWRWSSL--PIRTAITMAIWN*PPPP 171
           C+LP  +WRWSSL  P+     ++I   PP P
Sbjct: 57  CLLP--VWRWSSLGPPLMIWTRVSILKPPPKP 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,249,730
Number of Sequences: 237096
Number of extensions: 883248
Number of successful extensions: 1619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)