Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30j04
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036698-1|AAB88352.1|  425|Caenorhabditis elegans Hypothetical ...    31   0.18 
AC024794-6|AAK68493.2|  425|Caenorhabditis elegans Hypothetical ...    31   0.18 
U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical p...    29   0.74 
U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical p...    29   0.74 
U29535-11|AAK31456.1|  947|Caenorhabditis elegans Hypothetical p...    29   1.3  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    28   1.7  
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     26   6.9  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    26   6.9  
AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm rec...    26   6.9  
Z69634-7|CAA93453.2|  248|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z68296-2|CAA92592.1|  297|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical ...    26   9.1  
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    26   9.1  

>AF036698-1|AAB88352.1|  425|Caenorhabditis elegans Hypothetical
           protein B0273.3 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 50  RPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRRQNHVTFY*QR--RFDRVDQR 223
           R +D+ H    VF+R+  GG    + G ++  L   +RRR         R  R+D +D R
Sbjct: 64  RQIDVSHISSMVFNREMDGGIERNRLGSQAILLDENSRRRNPQFKSIALRSLRYDHIDHR 123


>AC024794-6|AAK68493.2|  425|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.1 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 50  RPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRRQNHVTFY*QR--RFDRVDQR 223
           R +D+ H    VF+R+  GG    + G ++  L   +RRR         R  R+D +D R
Sbjct: 64  RQIDVSHISSMVFNREMDGGIERNRLGSQAILLDENSRRRNPQFKSIALRSLRYDHIDHR 123


>U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical
           protein F36D4.5b protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 35  DYENGRPVDIEHAQLHVFSRQQSGGGHHYQF 127
           DY +   V I H+ + VF  + + GGH YQF
Sbjct: 25  DYASNIGVGIFHSGIEVFGVEYAYGGHPYQF 55


>U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical
           protein F36D4.5a protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 35  DYENGRPVDIEHAQLHVFSRQQSGGGHHYQF 127
           DY +   V I H+ + VF  + + GGH YQF
Sbjct: 44  DYASNIGVGIFHSGIEVFGVEYAYGGHPYQF 74


>U29535-11|AAK31456.1|  947|Caenorhabditis elegans Hypothetical
           protein C25H3.11 protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 54  QSTSNTHNFMYSPDNNLEVVIITNSDG---DHDGYLELTAAAK 173
           QST +T +   +P N L VV +T S+G   +H+  LE TA  K
Sbjct: 382 QSTVSTDDSNTNPSNALAVVPVTTSNGASSNHNQSLESTAIMK 424


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 115  MTTSRLLSGEYMKLCVFDVDWA-SVFIIPFL*QPDKNNL 2
            + T  ++ GE  + C+F +  A +V+++P L +P KN L
Sbjct: 1518 LLTESVVKGENSRTCLFGLIRAENVYVLPTLVKPSKNTL 1556


>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 160 PPPPKSCHLLLATAV 204
           PPPP+SCH+  +T +
Sbjct: 432 PPPPESCHVSTSTVL 446


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
           abnormal morphology protein19 protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 160 PPPPKSCHLLLATAV 204
           PPPP+SCH+  +T +
Sbjct: 432 PPPPESCHVSTSTVL 446


>AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm
           receptor protein 41 protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 78  FMYSPDNNLEVVIITNSDGDHDGYL 152
           F+Y   N+L ++ +T+ DG  D YL
Sbjct: 143 FLYGVVNSLSILFLTSPDGFTDDYL 167


>Z69634-7|CAA93453.2|  248|Caenorhabditis elegans Hypothetical
           protein B0001.4 protein.
          Length = 248

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 41  ENGRPVDIEHAQLHVFSRQQS 103
           ++GR +DI H  LH F R+ S
Sbjct: 38  QSGRQIDIVHLSLHSFYRELS 58


>Z68296-2|CAA92592.1|  297|Caenorhabditis elegans Hypothetical
           protein C46C2.3 protein.
          Length = 297

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 22/77 (28%), Positives = 30/77 (38%)
 Frame = +3

Query: 27  KNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGS 206
           KN      A  T    N  Y+  N +E+     SDG   GY +    AK   P I+ G  
Sbjct: 217 KNADGAHQAVKTFMVVNPTYTGKNLIELAARLYSDGSRSGYSDPLDQAKGTHP-ITQGNV 275

Query: 207 TVWTNAAPSHKLIKNNK 257
            +       H++I N K
Sbjct: 276 HILLRTI-QHRVISNTK 291


>U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical
           protein K09E2.2 protein.
          Length = 596

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 45  TDAQSTSNTHNFMYSPDNNLEV 110
           TD +S +  H+++  P+NNL +
Sbjct: 44  TDEKSANTVHSYVLDPENNLSL 65


>AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical
           protein Y26D4A.14 protein.
          Length = 952

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 24  YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSD 131
           ++NG+ K D +    T NFM    +   +++ T+ +
Sbjct: 786 FENGLSKKDIRHCFQTQNFMVDKKDKSNILVTTSDN 821


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
           protein Y40C7B.1 protein.
          Length = 916

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 24  YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSD 131
           ++NG+ K D +    T NFM    +   +++ T+ +
Sbjct: 750 FENGLSKRDIRHCFQTQNFMVDKKDKSNILVTTSEN 785


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,659,405
Number of Sequences: 27780
Number of extensions: 147106
Number of successful extensions: 350
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)