Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30j03
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0604 - 5312558-5312622,5312826-5312917,5314128-5314245,531...   134   8e-32
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864...    30   1.9  
05_01_0129 - 872127-872681,872762-873070,873180-873347                 29   2.5  
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652...    29   4.4  

>08_01_0604 -
           5312558-5312622,5312826-5312917,5314128-5314245,
           5314423-5314438
          Length = 96

 Score =  134 bits (323), Expect = 8e-32
 Identities = 61/99 (61%), Positives = 75/99 (75%)
 Frame = +3

Query: 261 MVCEKCEKKLGRVITPDPWKAGARNTVESGGRVVGENKALTAKKGRFNPYTSTFQQCKIC 440
           MVC KCEKKLG+VI PD WK GA NT ESGGR + ENK L +KK R+ PY +T  +C IC
Sbjct: 1   MVCAKCEKKLGKVIVPDKWKEGASNTNESGGRKINENK-LLSKKNRWTPYGNT--KCVIC 57

Query: 441 RTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYRQSS 557
           + +VHQ  + YC  CAY KG+CAMCGK++LDTK Y+QS+
Sbjct: 58  KQQVHQ-DAKYCHTCAYSKGVCAMCGKQVLDTKLYKQSN 95


>01_06_0801 -
           32085110-32085274,32086318-32086365,32086441-32086483,
           32086588-32086651,32086740-32086792,32086899-32086937,
           32087031-32087113,32087200-32087280
          Length = 191

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 393 GRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMC 515
           G++ P     +  K  +  V Q   + C AC+   GICA C
Sbjct: 57  GKYKPIVEPAKCQKCGKRNVRQAYHNVCTACSKDLGICAKC 97


>05_01_0129 - 872127-872681,872762-873070,873180-873347
          Length = 343

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 370 FSPTTRPPDSTVFLAPAFQGSGVI 299
           F+P+  P + TVFL P+F G G I
Sbjct: 299 FTPSYLPMEGTVFLVPSFAGDGGI 322


>10_02_0192 +
           6517985-6518348,6518647-6518699,6519984-6520021,
           6522332-6522717,6523752-6523822,6524620-6524732,
           6525019-6525337,6525576-6525886,6526493-6527069,
           6530483-6530538,6531643-6532126
          Length = 923

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 403 LNRPFLAVNALFSPTTRPPDSTVFLAPAFQGSGVITLPNFFSH 275
           LN  F  +N  FS     P  ++F+ P F    +IT+P   S+
Sbjct: 823 LNSLFAQLNPNFSENFILPKCSIFVLPRFTPKDIITMPRRMSY 865


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,717,205
Number of Sequences: 37544
Number of extensions: 281569
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)