Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30j03
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-15|CAJ30222.1|   99|Caenorhabditis elegans Hypothetical p...    97   1e-20
Z92785-3|CAB07202.1|  326|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein...    29   3.9  
AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein...    29   3.9  
AC024810-13|AAK68518.1|  405|Caenorhabditis elegans Feminization...    29   3.9  
AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization...    29   3.9  
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z80215-15|CAJ30222.1|   99|Caenorhabditis elegans Hypothetical
           protein C36B1.14 protein.
          Length = 99

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 48/102 (47%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
 Frame = +3

Query: 261 MVCEKCEKKLGRVITPDPW--KAGARNTVESGGRVVGENKALTAKKGRFNPYTSTFQQCK 434
           MVC  CEKKL +++  DP+  K   RN   SG + V     L   + +    T    +CK
Sbjct: 1   MVCGDCEKKLTKIVGVDPYRNKKVNRNADGSGPKTVTTKNRLIGVQKKA---TIVGAKCK 57

Query: 435 ICRTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYRQSST 560
           +C+  +HQ GSHYC  CAY+KGICAMCGKKI +TK  RQS+T
Sbjct: 58  LCKMLIHQPGSHYCSTCAYQKGICAMCGKKIQNTKGLRQSTT 99


>Z92785-3|CAB07202.1|  326|Caenorhabditis elegans Hypothetical
           protein F31E9.5 protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = -1

Query: 391 FLAVNALFSP-------TTRPPDSTVFLAPAFQGSGVITLPNFFSHFSQTIFVLF 248
           FL +N L SP       T RP D T+ L P       +T  +FF+ F   +FV+F
Sbjct: 30  FLLLNCLISPLYVFVNKTNRPRDKTMLLYPTTNHFYEMTKKSFFTFFG-LLFVIF 83


>AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein
           protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 396 RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 527
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 544 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 587


>AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein
           protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 396 RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 527
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 544 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 587


>AC024810-13|AAK68518.1|  405|Caenorhabditis elegans Feminization of
           germline protein1, isoform a protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 396 RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 527
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 330 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 373


>AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization of
           germline protein1, isoform b protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 396 RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 527
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 544 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 587


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +3

Query: 351 GRVVGENKALTAKKGRFNPYTSTFQQCKICRTKV--HQVGSHYCQACAYKKGICAMCGKK 524
           GR V  N A   K+    PY    Q C  C  ++  H    ++C   +  +  C  C  +
Sbjct: 426 GRFVQVNHAENNKRVEIKPYVMEEQYCDECEGRLCKHNYAPYFCGHASCLQYYCEGCWDR 485

Query: 525 ILDTKN 542
           +   KN
Sbjct: 486 MHIGKN 491


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 264 VCEKCEKKLGRVITPDPWKAGARNTVESGGRVVG 365
           + EKC K  G V+ P P K G     + GG V+G
Sbjct: 204 IIEKCAKTAG-VLLPGPVKFGLTAIAKLGGLVIG 236


>U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical
           protein C10G8.2 protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 423 QQC---KICRTKVHQVGSHYCQACAYKKGICAMCGKKILD 533
           QQC   K C  K  ++ SHYC     +KGIC  C  K L+
Sbjct: 96  QQCASHKDCNWKTSKINSHYCT----RKGIC--CQSKDLE 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,614,655
Number of Sequences: 27780
Number of extensions: 278035
Number of successful extensions: 729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)