Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30j03
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.28 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 426 QCKICRTKVHQVGSHYCQAC 485
           +C I + K H+ GSH C+AC
Sbjct: 264 ECPIGKFK-HEAGSHSCEAC 282


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 351 RRTPRYS*LQPSKGPALLLCPISFRTSHKPFLFCFL 244
           RRTPRY+ +      + ++ P+ F   +  + F +L
Sbjct: 412 RRTPRYNSVSKIDRASRIVFPLFFLAINVFYWFAYL 447


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 323 SLPRVRRYYSAQFLFALLTNHFCSVS 246
           S PRV++  SA  +F ++   + SVS
Sbjct: 57  SAPRVKKTASAGPIFGVIGGSYSSVS 82


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 323 SLPRVRRYYSAQFLFALLTNHFCSVS 246
           S PRV++  SA  +F ++   + SVS
Sbjct: 147 SAPRVKKTASAGPIFGVIGGSYSSVS 172


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 382 PPKKDDLIRTLPHFNSAKSAER 447
           PP++  L+   PH +SA  A++
Sbjct: 490 PPREAPLVGVQPHQDSATPADQ 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,370
Number of Sequences: 438
Number of extensions: 3639
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)