Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30i23
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601...    35   0.033
08_01_0269 - 2172363-2172538,2172632-2172697,2172790-2172887,217...    30   0.94 
01_01_1124 + 8916863-8917090,8917745-8917936,8918115-8918280,891...    30   0.94 
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875...    29   2.2  
09_01_0161 + 2401945-2402218,2402469-2402563,2402936-2403070,240...    27   5.0  
04_01_0618 - 8094991-8097288                                           27   6.6  
07_01_0516 - 3850252-3852870                                           27   8.7  
04_01_0474 - 6190280-6190636                                           27   8.7  

>11_01_0727 -
           6010537-6010548,6011029-6011606,6011709-6011774,
           6011867-6011964,6013238-6013608
          Length = 374

 Score = 34.7 bits (76), Expect = 0.033
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 118 FPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 282
           FP P  +   + + Y++ LA+   +    K +++A+ST TY G    +  +MS K
Sbjct: 100 FPDPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGFQAVMTEEMSEK 154


>08_01_0269 -
           2172363-2172538,2172632-2172697,2172790-2172887,
           2173442-2173791
          Length = 229

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 106 ILAVFPT-PAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 282
           I+  FP  PA +   +   Y+  LA    ++   K  ++A+ST TY G    V+ + S K
Sbjct: 88  IVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEETSEK 147


>01_01_1124 +
           8916863-8917090,8917745-8917936,8918115-8918280,
           8918373-8918794
          Length = 335

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 420 AHVDIVKLVFEHFNQAQVVGGGYRVCIGHHSALSKHCR 307
           A+ D V L F+HF Q+ V  G      G    + K+CR
Sbjct: 291 AYADDVNLFFKHFAQSMVNMGNISPLTGSQGEIRKNCR 328


>04_04_1099 -
           30886361-30886591,30886739-30886941,30887030-30887555,
           30887751-30887988,30888592-30888695,30888784-30889059,
           30889216-30889218
          Length = 526

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 398 WSLNISIKPR*LAAVTVSVSDTTPRFLNIAEFVTSFLYCLTDMSELTSVILPQ*VLVEYA 219
           W L +S  P  +  +   ++  +PRFL +   VT  +  L  M+ L +V LP   LV   
Sbjct: 217 WLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDVLEKMARLNNVQLPSGRLVSDK 276

Query: 218 N 216
           N
Sbjct: 277 N 277


>09_01_0161 +
           2401945-2402218,2402469-2402563,2402936-2403070,
           2403176-2403865
          Length = 397

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 170 PLPKNVTTLRSSSPNCLRIRP 232
           PLP+N T  +S  P  LR+RP
Sbjct: 159 PLPENPTLAQSKLPEFLRVRP 179


>04_01_0618 - 8094991-8097288
          Length = 765

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 52  ILCWLALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYI----EALAEKCHNVTVVK 207
           I  WL LLS L A  A  + A      Y+ H +   YI     AL E   +VT+ +
Sbjct: 366 IASWLRLLSILLATTAAGLYARSHKDMYNKHDITVTYILFFSTALLELISSVTLCR 421


>07_01_0516 - 3850252-3852870
          Length = 872

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 325 RGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNLI 429
           + V+S T  +      GL++M  D FD + VRN +
Sbjct: 317 KDVISWTGLLNGYMEFGLVDMAMDVFDRMPVRNFV 351


>04_01_0474 - 6190280-6190636
          Length = 118

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 253 TEVNSDMSVKQYKKLVTNSAM 315
           T+ + DMS+ QY+K++ NS M
Sbjct: 95  TDSHHDMSMDQYRKIIHNSQM 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,460,904
Number of Sequences: 37544
Number of extensions: 223818
Number of successful extensions: 562
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)