Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30i22
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   4.5  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   4.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   4.5  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    24   7.9  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 303  YNLIYSIIGTIKLMHINFLNASIL-RKRKLSKTAFT 199
            Y+LI  + GT K   I+ L  S+L +K+K+  T+FT
Sbjct: 950  YSLILGMPGTGKTTTISSLIRSLLAKKKKILLTSFT 985


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 334 PPPPQMLRCKRWYNFTKTAK 393
           PP P  LR  RW+   +TAK
Sbjct: 416 PPAPNRLRSLRWHYGIQTAK 435


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 229 EAQIIKDSIYDNTVLLNRDVFLNILKFANDVF 134
           E+ IIK S+  N  L  RD+F  ++K     F
Sbjct: 655 ESPIIKRSLIRNNRLKGRDLFSELVKITESSF 686


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 163  NILKFANDVFDNKAYMYVDDSEVSRYYNAVVKM 65
            +++KF    FDN   +Y++D +++  Y+ V K+
Sbjct: 1051 SVIKFCVVDFDNNRVVYLNDEDIT--YDVVEKL 1081


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,579,787
Number of Sequences: 5004
Number of extensions: 28787
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)